Haliotis rubra (blacklip abalone): 124278826
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Entry
124278826 CDS
T07967
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03013
Nucleocytoplasmic transport
hrj03015
mRNA surveillance pathway
hrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124278826
09122 Translation
03013 Nucleocytoplasmic transport
124278826
03015 mRNA surveillance pathway
124278826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124278826
03041 Spliceosome [BR:
hrj03041
]
124278826
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124278826
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124278826
Spliceosome [BR:
hrj03041
]
Complex C
Other components
EJC/TREX
124278826
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124278826
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
124278826
NCBI-ProteinID:
XP_046570554
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
MDCYVPDVESKIENAEKSKMGDTEVENEILDYEEDDNETTTEGAAGDGQVKKDVKGTYVS
IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVL
ATLQQLEPVDGQVSVLVLAHTRELAFQISKEYERFSKYMNNVKIAVFFGGMSVKKDEEVL
KKNCPHIVVGTPGRILALTRNKTLSLKHIKHFILDECDKMLAELDMRRDVQEIFRLTPHE
KQVMMFSATLSKDVRPICKKFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFEL
LDVLEFNQVIIFVKSVQRCMALAQLLIEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRIL
VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN
DVQERFEVNITELPDEIDISSYIEGR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggattgctacgtgcctgatgtggaatccaaaatagaaaatgctgagaaatcaaagatg
ggagataccgaagttgaaaatgagatcttggactacgaggaggatgataatgaaaccacc
acagagggggccgctggtgatgggcaagtcaagaaagatgtcaaaggaacatatgtatcc
atacacagctctggcttccgagacttcctgcttaaaccagaactgctgcgagccattgta
gactgtgggtttgagcatccgtcagaagttcagcacgaatgcattccccaggccatcctc
tccatggatgtgttgtgccaggctaagtctggtatgggaaagactgctgtgtttgtgctg
gcgactcttcagcaacttgagcctgttgacggacaggtatcagttttggttcttgcccac
acacgtgagctggccttccagatcagcaaggagtatgagaggttcagtaagtacatgaac
aacgtcaagatcgccgtgttcttcggtggaatgtcggtgaagaaagatgaagaggtgctg
aagaagaactgcccacacattgtggtgggaacccctggtcgtatccttgccctcacacgt
aacaagactctgagtctgaagcacatcaaacacttcatcctggacgagtgcgacaagatg
ctggcggaattggatatgagacgagatgtccaagaaattttccgcctgacgccacacgag
aaacaagtgatgatgttcagcgccactctcagcaaagatgtccgaccgatctgcaagaag
ttcatgcaagatccgatggaagtgtacgttgacgacgactcgaagctgaccctgcatggt
ttgcaacagcactacgtcaaactgaaggacaacgagaagaacaggaagctgttcgaactg
cttgacgtgcttgagttcaaccaggtgatcatcttcgtgaagagcgtacagcgatgcatg
gccctggctcagctcttgatcgaacaaaacttcccagctattgccatccacagagctatg
acccaagaagagaggttatcgcggtaccagcagttcaaagacttccagaagagaattctg
gttgcaaccaacttgttcggccgaggcatggacattgagcgagtcaacattgtcttcaac
tacgacatgcctgaagactctgacacataccttcacagggttgcccgagctggaaggttt
ggtaccaaggggttggccatcacatttgtgtcggatgagaatgatgccaaaattctcaac
gacgtccaggagaggttcgaggtgaacatcactgagctgccagatgagatcgacatctcc
tcatacattgagggacgttga
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