Haliotis rubra (blacklip abalone): 124279412
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Entry
124279412 CDS
T07967
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124279412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrj03021
]
124279412
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124279412
Transcription machinery [BR:
hrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124279412
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124279412
U7-dependent histone pre-mRNA processing factors
124279412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124279412
NCBI-ProteinID:
XP_046571189
LinkDB
All DBs
Position
Unknown
AA seq
1239 aa
AA seq
DB search
MSGESRRSTAAQFFIEEDAEAEQTTSTYERVVELLNQASLAQRDAQKISNLRQVQELIVH
KDPTLLDNFLDEILAFQSDRAVDVKRFVIGFMEEACKKDPEILSKVLPSLNMLLADENVN
VQKKVILSSIQMFKCTVQWLSKAKTATAEKTASWEQMHTLKSRLFEMLDSENDGIRTHVV
KFLETVVLVLSKRSADSDAQKQKEGDVSLDMIPDGRHYLKQKKLEDQGLKTFEMMLHFLG
SPHISSINLMTVMGALTNVARQRPLFFDQVVQAFEALHVNLPPTLAKSQVASVRKNLKMH
MMSLLKHPASVDHVTQITTLLTDLGASQSEVSKYLPKVDESRKRKNDEPSTSSKKAKVEE
DAADEEDDDIGMTPWSSRNESNRPTGASRQTAIDITADDLCPRLSPQNVADLVLLSMVML
PDTAPAQFQATYTPIAAAGTETQIRHIARLLATQLTMAGMGKGLGELQRTAMEQGISGDG
DTSPSSPSNFEPTSPKQLIQTLVGGTVSISDQEEFKKPEPITAPVVQPRKGVIRQFKLSS
VTHPLDSEKLDSMTLATVKRVFNTEKIAIQAHVPAARTKILACLTAAFGGELKDVMQTFI
FEDLRNRADLAFAWLFQEYANCQGFSVSAPLGERPTLHSYDECLTRLLTGLLEAQDQKDG
LFGRLMMEAPVITDNATHILKRYCQDPGRLDVGMAVLKDLILMRPSQRLRFLDVLLDLTS
HYEADVRNMAIETTKELYNKPSMQFPVEKYALVHLKKLLLPRPPSDSNQTIRVLRSTLSV
DIIEHWTEDVIKSHLYLYLGLLPANHRLIHELANVYTATSADIKRTILRVLEIPVKGMGM
QSPELLTMVENCPKGAETLVMRVIHILTDKTLPSSELVERIRDLYQKRVPDVRFLIPVLT
GLTKVEVISALPKLIKLNPMVVKEVFHRLMGGYGDSTASYTSPLTPAELLVALHNIDPAK
CDMKTIIKAANLCFSEKMIYTQEVLAIVMQQLMEQTPLPTLLMRTVLQSLSMYPRLIGFV
MNILQRLIIKQVWKQKKVWEGFVKCCQRTKPQSYQVLLQLPSSQLKNAFEICPDIREPLL
CHVKAFTSQQQAHIPKGIMTVLETDPLEEQRKAEAARIEAEKKAKQKEEEETFARVEAER
LAREKVEKEKSEKERADRELREKEKLEKEKQKAEKDKLERERKEKLDLEKKQQLEKEQRE
KEDQEKAIKKEKQDEEEKQRQEKEKEEVRKKKEREEKWH
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcgaaagtcgtaggtcaaccgccgctcagttcttcattgaggaggatgcagaa
gcagaacagacaacatcgacatatgaacgggtggtggagctcctgaatcaggcttcctta
gcccagagagatgcccaaaagatcagcaatctcagacaggttcaagagctgattgttcat
aaagatccaacacttcttgataatttcttagatgaaattttggctttccaaagtgaccga
gcagtggatgtgaagagattcgtgattggcttcatggaagaagcatgcaaaaaagaccca
gaaatcctctccaaggttcttcctagcctgaacatgctcttggcagacgagaacgtcaat
gtccagaaaaaggtcattctgtcatccatccaaatgttcaagtgtacggtacagtggctg
agcaaggccaagaccgcgactgcagagaagacggcatcgtgggaacagatgcacacactc
aaatctcgcctctttgaaatgctggactcggaaaatgatggaatccgaactcatgttgtg
aagttcctggagactgtcgtccttgttctctccaagagatctgcagactctgatgcccag
aagcagaaggagggggacgtgtccctagatatgattcctgatggtcgccattacctcaaa
cagaagaagctagaagaccagggcttgaaaacatttgagatgatgcttcatttccttggt
tcccctcacatctccagtatcaacctgatgactgtgatgggagcgttaacaaacgtagct
cgacagagaccgctgttcttcgaccaggttgtccaggcttttgaagccctccatgtgaac
ctgccgccaactctggccaagtctcaagtagccagtgtgaggaagaacctaaagatgcac
atgatgagtctcctaaagcaccccgcttctgtcgaccatgtcacccagatcacaacactg
ctcactgaccttggagccagccagtcagaggtgagcaagtatctgccgaaagttgacgaa
agtcggaagagaaagaatgatgagccatcgacatctagcaagaaagccaaggtggaggag
gatgctgccgatgaagaagacgatgacattggtatgacaccatggtcaagtcgtaatgag
tccaaccgaccaaccggtgcgagtcgtcagactgccatcgatataacagctgatgatctc
tgtcctcgtctgtctccacagaatgttgcagaccttgtccttctcagtatggtgatgctc
cccgacacagcccctgcccagttccaggccacctacacccccattgccgctgctggtacc
gagacacagatcagacatatagcccgtctcctagcaacacaactgaccatggcaggcatg
ggcaagggacttggggaactccagagaacagccatggagcagggcatatccggagatgga
gatacatcaccttcctctcctagtaactttgaaccaacatcacccaaacagctcatccaa
acactagttgggggcacagttagtatttctgatcaagaagagttcaagaagccggaacca
atcactgccccagttgtgcagcccaggaagggggtgatccgccagttcaagctgtcctcc
gttacacacccgctggactccgagaagctggactccatgacgctggccactgtcaagaga
gtcttcaacaccgagaagattgccatccaagcccatgtgccagctgctcgcaccaagatc
ctggcctgtctgactgcagcttttgggggagagcttaaagatgtgatgcagacgttcata
tttgaggacctgcgtaaccgtgccgacctggcgtttgcatggctgttccaggagtatgcc
aactgccagggtttcagtgtgtcagccccactgggggagagacccactctgcacagctac
gacgagtgtctcacacggctgctcacaggcctcctggaggctcaggaccagaaggacgga
ttgtttggtcgtctcatgatggaagccccggtgatcacagacaatgccactcacatcctc
aagcgatactgccaagacccgggtcgactagacgtagggatggcagtgttgaaagacctg
attctgatgcggccatcccagaggctcaggttcctagatgtcctgctggatctgacatca
cactacgaggccgatgtacggaacatggcaattgagacaaccaaagagttatataataaa
cccagcatgcagtttccagtagagaaatacgctctagttcacctgaagaaattgttgcta
ccacgaccaccatcagactccaatcaaaccatccgtgtcctccgctctacactctcagtg
gacatcatagaacactggacagaggatgtgataaaatctcacctgtacctctacctggga
ctcctaccagcaaaccacagactcatacacgagttggccaacgtgtacaccgccacttcc
gccgatatcaagcgaaccatcctgcgagtattggagataccagtgaagggtatggggatg
cagtcaccggagctgctgaccatggtagagaactgccccaaaggagctgagacgctggtg
atgagagtcatccacatcctcacagacaagactttgccgtcctcggagttagtggagaga
attcgagacctgtaccagaaacgagtgcccgacgtccgcttcctgatcccagtacttacc
ggtctcaccaaggttgaggtgatcagtgccctgcccaaacttatcaagctgaatccaatg
gtggtgaaagaagtctttcaccggctcatgggcggttatggtgacagcacagccagttac
acctcccccctcacaccagcggagttgttggtagctcttcacaacatcgaccccgccaag
tgtgacatgaagacaatcatcaaagcggccaacctgtgcttcagtgagaagatgatctac
acacaggaagtgttggctatcgtcatgcagcagctgatggagcagacgccgctgccaacg
ttgctgatgagaacagtactgcagtcattatccatgtacccacgactcatcggctttgtg
atgaacatcctacagagactcatcattaaacaggtgtggaaacagaagaaggtgtgggaa
gggtttgtcaagtgctgccagcgcaccaagccccagtcctaccaggtgctcctgcagctc
ccgtcctcccagctgaagaacgcctttgagatctgccccgacatccgcgagccgcttctt
tgtcacgtgaaagcattcacttctcagcagcaagcccacatcccaaagggcatcatgaca
gtgttggagacagatccgctagaggaacagcgtaaagcagaagcagcacgtattgaggca
gagaaaaaggccaagcagaaagaggaagaggagacgtttgccagggtggaagctgagcga
ctagctcgggaaaaggtggagaaagaaaaaagcgaaaaggagagagcagatagggaattg
cgggaaaaggagaaattggaaaaagagaaacagaaggctgaaaaagacaaactggagaga
gaaaggaaagaaaagttagacctggagaagaagcaacagttggagaaagaacagagggag
aaggaggaccaggagaaggctataaagaaggagaaacaagatgaggaagaaaagcagagg
caagaaaaagaaaaggaagaagtaaggaaaaagaaagaaagggaagaaaaatggcattag
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integrated database retrieval system