Haliotis rubra (blacklip abalone): 124280583
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Entry
124280583 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124280583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124280583
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124280583
mRNA degradation factors
5'-3' decay
Decapping complex
124280583
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
124280583
NCBI-ProteinID:
XP_046572518
LinkDB
All DBs
Position
Unknown
AA seq
863 aa
AA seq
DB search
MADPHVAFGSGFSALGAGKLNQIDNELMEAPEDEDDFDVLNEETFGDIGDTEFDWEKQHE
RFAEELEAHSFNDSRQNGNRTRDSGFDTAEKSYRLQEEIMEQSINHLVLDEEEERHLTDP
AIVNVSGSAAIPFSSHKQTNLDKLFGPSSPPAFLDTEHLVSPTSKNIWGSPARDSFTKPV
NKLQALFDSAKGAGSPTQNSNKPSVIQAKPQVSGILLAPQSPIVPPKCPNTGRDXNQLLK
KKTPTVMTAEELERQMRGESPPNRPPVKRTIATPGSVSTFPDHKSPFSMPVPIQPIGRPL
GPMMPNLSQPPPGFSPVQVSRSHDGRMSPLHQRSMTPPLGGHSPGQGFMGMSSSPLARSI
SPTPPQLCGTPIHRPPSPVQARFMSPYNSPGAIYMGNANRSFSSPIIIQRGHRVPMPFGP
MGSPGQRFPHHSPMSDPHGMRGPRPGRGGPYHPNNYYHKNQGHPHGQNNNNPHRYFNDSR
NRQHHEDDLVDHDMDEDSYDGLMTQKEKDWIIKIQLMQLQTDNPYLDDYYYTYYTLKKKA
KERQKLRESGEFSDDDPKLVIPNLAKVETKAYTPAQFEGSLGRLTTASVHNPRTIIDLSK
NVAQTKEDNPQNVSKELRRVRQLLMDIEKGFLLLLDIDDLEKKLLALPEESRMPLVFERR
EKVDQLFAFLSADDNIETFIQIMSVRKGRKLLSRVLPLLDPAQQCIIVSLMLCNLTQLMR
KDQAEEGQSMLTDSVHQALNKSSFEMLATVGEQIRQMQSQGKAITAMLQNKFGSTILCAM
LARMEDIYKNTSPVDIDNQLQTNWCHFVELLVECLSEVSDESIVAPLNPSEKLVEHLERL
LNKKLVASVEDKLLVILGTKSQS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccgcatgttgctttcggttcaggcttctctgcccttggggcagggaagctt
aaccagatagacaacgagctgatggaggccccagaagatgaagacgactttgatgtacta
aatgaagagacatttggggatattggagacactgagtttgattgggaaaaacaacatgaa
agatttgctgaagaattggaggcccactcgtttaatgattcaaggcaaaatggtaatcga
accagggattcaggctttgacacagctgaaaagagctacagacttcaagaggagatcatg
gaacagagcatcaaccacctggtgctggatgaagaggaggagcgccacctcactgatcca
gctattgtcaatgtgtcgggaagtgctgccataccattctcatctcataaacagactaat
cttgacaagctgtttggaccatcgtcccctccagctttcctggacacagaacacctggtg
tcccccaccagcaagaacatatggggttctcctgccagggactcctttacaaaaccagtc
aacaaactacaggctctgtttgactctgctaagggggctggaagtcctactcagaattct
aataagccatcagttatccaagccaagccccaggtgtcgggtatcctgcttgctccccag
tctcccatagttccccccaagtgcccaaacactggcagagattagaaccagctgctgaag
aagaagacgcccacggtgatgacagccgaggagttggagcgccagatgaggggagagtcc
ccaccaaaccgccctcctgtgaagagaaccattgccacaccaggcagtgtctccacattt
ccagatcacaagtccccgttctccatgccagtacccatccaacccattggtagacctctc
ggtcccatgatgccaaacttatcacagccaccgccagggttcagcccagtgcaggtgtct
cgttctcatgacggacgtatgtcacccctccaccaacgatcaatgaccccaccccttgga
gggcactcacccggccaaggctttatgggcatgtcatcgtcccctcttgcacggtccatc
tctcccacccctccccaactctgtggtacccccatacatagaccaccgtccccagtgcaa
gccaggttcatgtcgccctacaacagcccaggcgccatctacatgggaaatgcaaaccgg
tcgttctccagcccgatcatcatacaaagaggtcaccgcgttcccatgccctttggtcca
atgggcagtccaggccaaaggttcccccatcattcaccaatgtcagatcctcatggaatg
aggggacctcgtccaggcaggggaggaccatatcatccaaataactattaccacaaaaat
caggggcacccccatggccagaacaacaacaatccccatcggtacttcaacgacagtcgc
aacaggcagcatcatgaggatgacttggtggaccacgacatggatgaggacagctacgat
gggttgatgacacagaaggagaaggactggatcatcaaaatacaactgatgcagctgcag
acggacaacccctacctcgacgactactactacacttattatacactgaagaagaaggct
aaggagagacagaagttacgagagagtggggaattcagtgatgatgatccaaaacttgtc
ataccaaaccttgcgaaagtggaaacaaaggcttacacaccagctcagtttgaaggttca
ttaggtcggttgacaactgccagtgttcacaatcctcgcacaatcatcgatctgtccaag
aatgtagctcagacaaaggaggacaaccctcaaaatgtcagcaaggagctgcgacgagtt
cgccagttactcatggacattgagaagggatttctgcttctgcttgatattgacgacctg
gagaagaagctactggcacttcctgaagaaagcaggatgcctctggtctttgaaagaagg
gagaaagtggaccagttgtttgccttcctttcagctgatgacaacattgaaacatttatt
caaatcatgtcagttaggaaggggagaaaactcttatcacgagtcttgcctttgctggat
cctgctcagcagtgtattatcgtctccttgatgctgtgtaacctcacacaactcatgagg
aaagatcaagcagaagagggccagtcaatgctaacagattctgtgcatcaagctctgaac
aagagttcatttgaaatgctggcaacagtgggagaacagatccggcagatgcagagccag
ggaaaggcaataacagccatgttgcaaaacaagtttggctcaaccatactgtgtgcaatg
ctggccagaatggaagatatttacaagaatacctctcctgttgatattgataatcagctg
caaacaaactggtgtcattttgtggaactgttagttgagtgtttgtctgaagtctctgat
gagagcatcgttgcacccttgaacccgagtgaaaagctggtggagcacctggagagactc
ctcaacaagaagctagtggccagtgtggaggacaaacttcttgtgatacttggcaccaag
tcccaatcctga
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