KEGG   Haliotis rubra (blacklip abalone): 124287039
Entry
124287039         CDS       T07967                                 
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1-like
  KO
K14406  cleavage stimulation factor subunit 1
Organism
hrj  Haliotis rubra (blacklip abalone)
Pathway
hrj03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hrj00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    124287039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hrj03019]
    124287039
Messenger RNA biogenesis [BR:hrj03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     124287039
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WDR55 CSTF1_dimer EIF3I Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N WD40_RFWD3 NBCH_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF4 RMC1_N Beta-prop_WDR19_1st Beta-prop_Nup120_160 B-prop_COPA_B_2nd Ge1_WD40 Beta-prop_NUP159_NUP214 Cytochrom_D1 Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_SPT8 Tricorn_2nd
Other DBs
NCBI-GeneID: 124287039
NCBI-ProteinID: XP_046579457
LinkDB
Position
Unknown
AA seq 431 aa
MKTAELEVKQRDLLYRLIISQFIYDGHKELAATFASVIKPHPACPPSDRLLQLMKLGLKV
EDDQNESRALNPDMVAPGSGIDLEFETEVQTISAEAALYETCYVTAHKGPCRAGAFHHTG
QLIATGSEDASIKILDVERMLAKSATPAEIIAMETPQQQMENHPVIRTLYDHSGEVTCLD
FHPFHQILASGSTDFSIRFFEFSKPSVKKAYKSMQEAAQVRCINFHPSGDFVLVGTEHPT
LRLYDVNTFQCFVSHDPSGQHEGPVTSVNWSPNANLFTTCSKDGSIKVWXGVSHRCINTF
KNAHDGHEVCSVTFSRNSKYILSSGKDSLVKLWELSTNRCLIMYTGAGATGKQEHRTQAV
FNHTEDYVLFPDEKTTSLCCWDSRNAERQKLLSLGHNGVVRSIVHSPTGPAFVTCSDDYR
ARFWYRKASTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgaagacagcagaattagaagttaaacaaagagacctcttgtacagattgattatcagt
cagtttatctacgatgggcacaaggaactggcagcaacatttgcgagtgtcatcaagccc
cacccagcctgtcccccctcagacagactgctacagctgatgaagttgggactgaaagtg
gaggatgatcaaaatgaatcccgtgctctcaaccctgacatggttgcccctggttccggc
atcgatctcgagtttgagactgaggttcagacaatttctgccgaggctgcactatacgag
acatgctatgtgacagctcacaaggggccatgtagagcgggggccttccaccacacaggt
cagctgattgcaacggggtctgaagatgcttccatcaagatcctggatgtggagagaatg
ttggcgaaaagtgcaacacctgcagaaatcattgccatggaaactcctcaacagcagatg
gagaaccatcctgtcatcaggactctgtacgatcacagtggggaggtgacttgcctggac
ttccaccctttccaccagatcctggcatctgggagcaccgacttcagcatccgattcttc
gagttctccaagccctcagtgaagaaagcctacaagagtatgcaggaagcagcccaagtg
cggtgtatcaacttccatccatcaggagacttcgtgcttgtcggcaccgaacatccaaca
ttacggctgtatgacgtcaatacattccagtgttttgtgtcacatgacccaagcggacag
catgaaggaccagtcacctctgtaaactggagccccaatgcgaacctgtttactacctgc
tctaaggatggcagcatcaaggtgtggnacggagtgagtcaccgatgcatcaacactttc
aagaacgcccatgatggccacgaagtctgctcagtcacattctccagaaattccaagtac
atcttgtcgagtggcaaggactcgctggtcaagctgtgggagctgtccactaaccgctgc
ctcatcatgtacaccggcgccggggccacagggaagcaggaacatcgcacacaggcagtc
ttcaaccacaccgaggactacgtgttgtttcctgacgagaagacaaccagtctgtgctgc
tgggactcacgcaatgctgaacgacagaaactcctttctctgggtcacaatggcgtggtt
cgcagtatcgtccactctccaacagggccagccttcgtcacatgttctgatgactacaga
gcccgcttctggtaccgcaaagcttccacagactga

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