Haliotis rubra (blacklip abalone): 124287840
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Entry
124287840 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03020
RNA polymerase
hrj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124287840
09124 Replication and repair
03420 Nucleotide excision repair
124287840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrj03021
]
124287840
03400 DNA repair and recombination proteins [BR:
hrj03400
]
124287840
Enzymes [BR:
hrj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124287840
Transcription machinery [BR:
hrj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124287840
DNA repair and recombination proteins [BR:
hrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124287840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124287840
NCBI-ProteinID:
XP_046580270
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MYGQDEEMYDEGDEGDDLTPDLWQEACWIVISSYFVEKGLVRQQLDSFDEFIQMSVQRIV
EDAPPIDLQAEAQHTSGTLETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT
YSAPLYVDITKTVIKEGEESVETLHQKTYIGKIPIMLRSTYCLLNGLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFQQKDSKYAFKTELRSCLEHSSRPTSTLWVNM
MARGGSGAKKSAIGQRIVSILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMME
MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSEFCET
KKAYFLGYMVHRLLMAALGRREVDDRDHYGNKRLDLAGPLLAFLFRGMFRNLMKEVRMYA
QKFIDRGKDFNMELAIKTRIITDGLKYSLATGNWGDQKKASQARAGVSQVLNRLTFASTL
SHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGGAVGLVKNLALMAYISVGSQPS
PILEFLEEWSMENLEEVAPSAIQDATKIFVNGCWVGIHRDPDQLMATLRKLRREMDIIVS
EVSMIRDFHDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVAX
GVVEYIDPVEEETIMLAMTPDDLQEKDSAYCSTYTHCEIHPAMVLGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNYHVRMDTLAHGLFYPQKPLVTTRSMEYLRFRELPAGINSI
VAIACYTGYNQEDSVILNQGAIDRGFFRSFFFRSYKDSESKKGLDQEEVFEKPTRDYVQG
MRPATYDKLDEDGIIAPGTRVSGDDVLIGKTITLPANDDELESTARRFSKRDASVFMRRT
ETGIVDQVMVTINNDGYKFCKIRVRTVKTTQIGDKFASRHGQKGTCGITYRQEDMPFTCE
GITPDIIINPHAIPSRMTIGHLTECLQGKVAANKGEIGDATPFNDAVNVQKVSDLLSQYG
YHQRGNEVMMNGHTGRKLNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRS
RDGGLRFGEMERDCQIAHGAAQFLRERLXEASDPYRCHVCNICGLICIANLRNQTFECRG
CKNKTHISQVRIPYACKLLFQELMSMSIAPRMMVIA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtatggtcaagatgaagaaatgtatgatgagggagatgaaggggacgacctcacccca
gatctgtggcaggaggcctgctggatcgtcatcagttcatattttgtcgagaagggtctt
gtacgtcagcagcttgactccttcgatgagttcatccagatgtcggtgcagagaattgta
gaagatgctccaccgatcgatctgcaggcagaggcccagcatacgtcaggaacattggag
acaccgccaaggtacctactgaagttcgagcagatctatctgtccaagcccactcactgg
gagaaggacggtgctcctagccccatgatgcccaatgaggcacggctccgaaatctcacg
tactctgctcccctgtacgtggacatcacaaagacggtgatcaaggaaggtgaggagtcg
gtggagaccctgcatcagaagacctacatcggcaagatccccatcatgttgaggtccacc
tactgcctgctcaacggactcacagatcgtgacttgacagagctgaacgagtgtccgctg
gatcccggtggctatttcatcatcaatggatctgagaaggtgctgattgctcaggagaag
atggctaccaacacagtgtatgtgtttcagcagaaagactcaaagtacgccttcaagaca
gagttgaggtcgtgcctggagcactcgtcacgtcccaccagtacactgtgggtcaacatg
atggccagagggggatcgggagctaagaagagcgccattggtcagagaattgtgtccatt
cttccttacatcaagcaggagatccccatcatcattgtcttcagagctctgggcttcgtg
tctgacagggatatccttgaacacatcatctacgacttcgatgatcctgaaatgatggaa
atggtaaagccatcgctggatgaggcctttgtcatccaggaacaaaatgtggctctcaac
tttattggagccagaggtgctcgacctggtgtcacaaaggataagagaatcaagtatgcc
agggaaatcttgcagaaggaaatgttgcctcacgtgggcgtcagtgagttctgtgaaacc
aagaaagcctatttccttggatacatggtccatcgattgctgatggcggctctaggaagg
cgtgaggtagatgacagagatcactatggcaacaagaggctggatttggctggtcctctc
cttgctttcttgttcagaggtatgttccgtaacttgatgaaagaggtacggatgtatgcc
caaaagttcattgatcgggggaaagatttcaacatggagctggccattaagactcgtatc
atcacagatggactcaagtactccttggccacaggcaactggggggatcaaaagaaggcc
tcacaggctagggctggagtgtctcaggtgttgaacagactgacttttgcctcaacattg
tctcacctgcgacgtctcaactcccccatcggccgagacggtaaactggcccgacctcga
cagctgcacaacaccctgtggggtatgatctgtccggccgagacacccgagggtggtgcc
gtcggcctggtgaagaatctggcactgatggcctacatctctgtggggtcgcaaccatcc
cccatcctggagttcttggaggagtggagtatggagaacctggaagaggtggcgccatcg
gccatacaggatgcaaccaagatcttcgtgaatgggtgctgggttggcatccatcgtgat
cccgaccagctgatggccactctgaggaagctgagaagagagatggacatcattgtgtct
gaggtatccatgattcgcgacttccacgaccgtgagatccgtatttacacagatgcagga
cgtatttgtcggccgctgctgatcgtggagaatcagaaactgcttctgaagcagagtcac
atcaagcagctgaaacagagggagtacaacaactacagttggcaggacttggtagcgngc
ggtgtcgtggagtatattgaccccgtggaagaggagacgatcatgttggccatgacccca
gacgacctccaggagaaggattcggcgtattgttccacctacacccactgtgagatccac
cctgccatggtgcttggggtctgtgcctccatcatcccattccctgatcacaaccagtct
cctcgtaacacataccagtctgctatggggaagcaggctatgggcgtttacatcaccaac
taccacgtgagaatggacaccctggcccacggcctgttctacccccagaaacccctcgtc
accacacgatccatggagtatctccgcttcagagaactaccagctggtatcaactctatc
gtggccatcgcctgctacacagggtacaaccaggaagattctgtcatcttgaaccaggga
gccatcgacagggggttcttccgatcctttttcttccgttcctacaaggattctgaatct
aagaagggtctcgatcaagaggaggtgtttgagaagccaaccagagactacgtccaaggt
atgcggccagcgacatatgacaaactggatgaagacggcatcatcgcccctggaacccga
gtgtctggagatgatgtgttgattgggaagactatcacgctcccagctaacgacgatgag
ctcgagtccacagccaggaggttctccaagagagatgccagtgtcttcatgaggaggact
gagacaggcattgtagatcaggtgatggtgaccattaacaatgatggctacaagttctgc
aagatccgagtcaggaccgtgaagacgacacagatcggagacaagtttgctagtaggcac
ggacagaagggaacctgtggtataacatacaggcaagaggacatgcccttcacgtgtgag
gggatcacccccgacatcatcatcaacccccacgccatccccagtcgtatgaccattggt
cacttgacagagtgcctgcagggcaaggttgccgccaacaagggcgagatcggtgacgcg
acacccttcaacgatgctgtcaatgtacagaaggtgtctgatctgctcagtcagtacggc
tatcatcagagaggcaatgaggttatgatgaatgggcacacaggacgtaagctgaacgcc
cagatcttcttgggtcccacctactaccaacgtctcaagcatatggtggacgacaagatc
cattcccgagccaggggccccctacagatcctcaacagacagcccatggagggaagatcg
cgtgatggcggtctgcgttttggtgagatggagcgagattgtcagattgcccacggtgcc
gcgcagtttcttagagagagactcnttgaggcgtcagacccataccggtgccatgtgtgc
aatatctgtggcctcatctgcatcgccaacctccgcaaccagacgttcgagtgcaggggt
tgcaagaacaagacacatatttcccaggtgcggattccgtatgcgtgcaagctgttgttc
caggagctgatgtcgatgagtatcgcgcctcgtatgatggtcattgcctag
DBGET
integrated database retrieval system
