Haliotis rubra (blacklip abalone): 124288885
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Entry
124288885 CDS
T07967
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124288885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124288885
Enzymes [BR:
hrj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124288885
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124288885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
EVC2_like
Motif
Other DBs
NCBI-GeneID:
124288885
NCBI-ProteinID:
XP_046581421
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MEVTKANFKECLSQIEEAINEADFLAIDGEFTGLHAKDAESIGSFDTPEERYHKLRKGAA
QFLLVQFGLAAFKYDPETKSYTARPFNMYVFPRPFSRQAPDRRFLCQASSIDFLVSQNFD
FNKLFREGISYLTPPQEEHLKESIKKRNAEHAQLSSPAFTSPHGASAGPNKGPVEVPDDQ
KDFIDNICEQIKDYIAQATKEPLQLPQCSAFQRKLIYQTARLKYSNIHLETKIGEKKERY
IVVTAVDCEKDLRDKEKAKMEAEMAEVDEAIGFCKVTQLLSQSGKLVIGHNMLLDLIHVI
NQFNFPLPEEYEEFKAMVKCCLPRLLDTKLMASTAPFKDLIINTALGDLRRTVEAKPFVK
PQVDLPEEFSKYGSETEFLHEAGYDAYITGIAFIGMANFLGTYQQPPKDWISPQSPLIEP
FVNKLFMMRVHDIPYLNLTGPDVIPAAREHVFHVTFPKEWKSHDIVGLFAPYGGVSLSWI
NETSAFAALFRKDNAPAAVQGLVKGEDDSVKVMTYEDFKKQAAQSPFSLLPRKRKHTSDD
AENSKKPRISPAAESTTGPEGGEVKKVDAGKEKMETNSGCESPDSCSDKKAKKMFEEPEV
W
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcactaaagcgaactttaaggagtgcttaagtcaaatagaagaagctatcaac
gaagcagatttcctcgctatcgatggagaatttacaggacttcatgccaaggatgctgag
tcaattggatcatttgatactcctgaagagagataccacaagctgaggaagggtgcagca
cagtttttacttgtacagtttggcctagcagcttttaaatatgatccagagacaaaaagt
tacacagcccgaccgttcaacatgtatgtattcccacgtccgttcagccgccaggctcca
gatcgacgatttctctgtcaggcttcaagtattgacttccttgtgtctcagaattttgat
ttcaacaagttgtttagagaaggtatatcctacttgaccccaccacaagaagaacacctg
aaggagtcaatcaagaagaggaatgctgaacacgctcagctgtcatctccggccttcacc
agtccccatggggcaagtgctggtcccaacaaggggccagtagaggtcccagatgatcag
aaggacttcattgacaatatctgtgaacaaatcaaggactacatcgcccaggcaaccaag
gagcccttacaattgccccagtgttcggcattccagaggaaacttatctaccagacagcc
agactcaagtactccaacatccacctggagacgaagattggggagaagaaggagcgctac
atcgtggtgacagctgtggattgtgagaaggacctgagggacaaggagaaggccaagatg
gaggctgagatggccgaggtggatgaagctattggtttctgtaaagtcacacagctgctg
tcacagtctggcaagctggttatcggacacaacatgctgttggatctcatccatgtcatc
aaccagttcaacttccccctcccagaggaatatgaagagttcaaggcaatggtgaaatgt
tgccttccaagattgctggacacaaaactgatggccagtacagctccattcaaggatctc
atcatcaacacagcattgggagatttacgcaggactgttgaagctaaaccttttgtaaag
ccccaggttgatcttccagaggagttttccaaatatggttcagagacagagtttctgcac
gaggcaggctatgacgcgtacatcacaggaattgctttcataggcatggcaaactttctt
ggtacataccagcagccccccaaagactggatctctccacagtcacctctcatcgagcct
tttgtcaacaagctgttcatgatgagggtccatgacatcccctatctcaacctgactgga
ccagatgtgatcccggcggcgagagaacatgtgtttcatgtcaccttccctaaggagtgg
aagtcacatgacatcgtcggcctgtttgctccatatggtggtgtgtccctgtcatggatc
aatgaaacttcagcctttgctgccctgttcaggaaagacaatgctcctgcagctgtccaa
ggcctggtgaagggagaagatgactctgtgaaggtgatgacatatgaagacttcaagaaa
caagcagcacaatcaccattttctctgctgccacggaaacgcaaacatacttctgatgat
gcagaaaattcaaagaaacccaggatatctccagctgcagagtcaacgacaggtccggag
gggggcgaagtgaagaaggtggatgctgggaaggagaagatggagaccaactctggatgc
gagtcaccagattcctgcagtgacaagaaagccaagaagatgtttgaggagcctgaggtc
tggtag
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