Haliotis rubra (blacklip abalone): 124291674
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Entry
124291674 CDS
T07967
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
hrj
Haliotis rubra (blacklip abalone)
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124291674
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
124291674
3'-5' decay
Other 3'-5' decay factors
124291674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
ResIII
zf-CCCH
AAA_30
AAA_19
PhoH
AAA_22
PAM2
zf-C2H2_jaz
UvrD-helicase
zf_CCCH_4
AAA_7
zf-CCCH_2
zf-CCCH_4
zf-met
SRP54
zf-C2H2
AAA_16
Terminase_6N
zf-C2H2_4
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
124291674
NCBI-ProteinID:
XP_046584678
LinkDB
All DBs
Position
Unknown
AA seq
1650 aa
AA seq
DB search
MADSTSEADRKPTNHDTANSNDTCEHKEELAEVINNVNAFIKQRKHTEALEECNKGLHNN
VNNDKLLEKKIKVLCHLGQFQEAYDLACDWKVRDPQHPVAQKEVNRLKIVLNALRDQDSD
DDAESPGVRGPAQPDVRSSPDGREEGTEAVSPQTRPATNIVLTLPPMPTKPPKSEVQSVS
EFVCTFCDIKFTRQDELDTHCRSDLHKKRLTSDEGHGWKFRAPPRGLSSEEYVLCLRFSE
IGRCPFGDKCTQAHSEDELNEWKERFKFRKQQLQKARDSQLHGNTYTDQLMERLTNTESP
KAVLVHNLDFVKVHVNSDLKVNMTNKKCTNAWTFTITSKICLHSVALLDDVNRSYFYISS
ISVGPKKTQKYQNLENQCQEWINQDTANKGHGEYVYRVKVVFKTDLYGTFRQSIVFDFGL
EAVMAREMQVESAPVMDTEKLTKDLILTDSSRWTEEKVEITPFEPVSNPYSDTEKNLLSK
YTLPRPEKLSMSETIIQTLSKENYRLWMHEMLYLEEMAQLSFVSRFNVKTSLQLVNRFLL
MPGALSTAKYAHDGQLFARMKLEDDLSEDSMGGRLILMNSQMALIAPAITDAEGKLAQTD
QVYEALIEDKGKNFIFLRVSARCIKELNLSCDQEFEAQVQFQLNRLSKCEMHSAVDKLPT
LDIVFPHKSDPAIPWTPNRQWNGDMDNKLNVKQKEAIVGVVTDLNIKLPPLLIVGPFGTG
KTFTMAQAAKQVLKQEDTRILICTHSNSAADLYIREFFHPYVEDNHPEAKPLRVLYRLRW
VQTVSDIVLDYCLWDKSVGLFRYPKLEDLEKHRIVITTLSTSRYISDLDLPSGFFTHIFI
DEAAQALESETLIPLSMAGESTRIVLAGDHMQLSPEVYSDYTRQQGFHSSLLERLYELYP
ADSACKIMLCENYRSHSAIVDFTSELFYDNKLIASGKLTAHNSHYPLTFYAAKGEEIQHA
NSTGFYNNSEVYEIVERVDELVKKWPEDWGPIEEGGIGVVAPYSDQVIRIRAEMRKKKMY
NISVERVLNVQGKQYRVIILSTVRTRHSCRSDTSVEDLMDYGFLSNVKLLNTAITRAQSL
VVVVGDPVSLCLVGKCRKVWEYYLEICNNSSSFHGMTWTSLRSQLDGAEMTKTYVLNPLA
PEFVPNRLFHSSQSAADAAGQFLQGMPHNMPWQHLSPYHPMTTSYGHSVIQPMYQPPVMP
YYPMPMYHPGFFSPMVYRPYIPHRQGSPVSGRSSSPKTVTTRATPMPPANHGMRGRPEHG
KNSPDGAKQGDHPPSHMKAFYKQPKGRMMVYLPPRMPMSYPPYYHHPMFQHHPYFYIGDE
QHPHRLSVHQPPFMPQGPRFAPYGPVLPYGHPSGPQAGERGQSSGPSSGSNSNVSTPTPM
EDAEMRSRSEDRSSPSVLGQKIQLMPGVKHVPAHLLNTEGKEVGSKSSTPTTPPPEDRRE
ERRSTPLSERPYSPANYGKMPDNNKVEKINNRDNLNIVSNKKQARKQLKLKTGFSRQFSD
DLPTPTEITDLVRMIEESIEEKKEEEEPLPKNKPGELNGQSRLSSLTKLQLNLNNGQDLS
DKGAEPSSAGSQNGEKLSYAGVLRKPPLPPAPVSRNGSNMDTSPLIEPQTPRTPSGFITP
GTEMEMDPFGILKSLNIESSSPQHHCYPRY
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcacgtccgaggccgacagaaaaccaaccaatcatgatacggcaaactct
aacgatacctgtgagcacaaagaagaactagcggaagtcatcaacaatgtaaatgcattt
ataaagcagagaaaacatacagaggcactggaagaatgtaataagggtttgcataacaat
gtaaacaatgacaagctactggagaagaagatcaaggtgctgtgtcatctcggccagttc
caggaagcatatgacctcgcctgcgactggaaggtccgagatccacagcatcccgtggct
cagaaagaagtaaaccgactcaagattgtgttgaatgcgctacgtgatcaggactctgat
gatgatgccgaatctccaggtgtgagaggaccagcccaacctgatgtcaggagttccccc
gatgggagggaggaggggactgaggcggtgtccccccaaaccaggccggccaccaacata
gtgcttaccctccctcccatgccaacgaaacctccaaagtcagaggttcaatctgtctca
gagtttgtgtgtaccttctgcgacatcaagttcacacggcaagatgagttggacacacat
tgccgcagtgacctacataagaaacgactgacctctgacgaaggtcatgggtggaagttc
cgagctccgccccgtggcctcagcagtgaagaatatgtcctctgtctcagattttctgag
attgggcggtgtccatttggagataagtgtacccaggcccactcggaggatgagctgaat
gagtggaaggagcggttcaagttccggaaacagcagctgcagaaggcgcgggacagtcag
ctccatggtaacacctacacagaccagctcatggagagactgacaaacactgagagtcct
aaagctgtgctggttcacaacttagactttgtaaaagtgcatgtcaactctgaccttaag
gtcaacatgacaaacaagaagtgcaccaatgcctggaccttcaccatcacctcgaagatc
tgcctgcacagcgtggccctcctggatgacgtgaaccgcagctacttctacatctcgtcc
atttccgtgggccccaagaagacacagaagtaccagaacttggagaaccagtgccaggag
tggatcaaccaggacactgccaacaagggccacggtgaatacgtctacagggtcaaggtt
gtattcaagaccgacctgtatggcacattcaggcagtccattgtctttgactttggtctg
gaggcggtgatggcccgcgagatgcaggtggagtctgcaccagtgatggacactgagaag
ctgacgaaggacctcatcctcacagactccagcaggtggacggaggagaaagtggaaatt
acaccctttgaacctgtttccaacccgtactctgacacagagaagaacctcctgtctaag
tacacattacctcggccggagaagctgtccatgtcagagaccatcatccagaccctcagc
aaggagaactaccgcctctggatgcatgagatgctctacctggaggagatggcccagctc
agcttcgtgtcccgattcaatgtaaagacatccctccagctggtgaaccgcttccttctg
atgccgggtgccctgtctactgccaagtatgcccatgatggacagctgttcgcgaggatg
aagcttgaggatgacctctctgaggactctatgggagggcggctcatcctgatgaactcc
cagatggcacttatcgcaccggccatcactgatgctgaaggaaaactggcgcagacagac
caggtgtacgaagcattgatagaggacaagggaaagaacttcatcttcctgcgagtctcc
gcccgctgcatcaaagaactcaacttgtcatgtgaccaggagtttgaggctcaggtgcag
ttccagctgaaccgcctttccaagtgtgaaatgcactcagctgttgataaactgcctacg
ctggacattgtgtttcctcacaagagtgatccagccatcccttggactccaaacaggcag
tggaacggggacatggacaacaagctaaatgtgaagcagaaggaggccatagtgggtgta
gtcaccgatctcaacatcaaactgccgccactcctcatcgtggggccatttgggacaggg
aaaacattcaccatggctcaagcagctaagcaggttctcaagcaggaggacacaaggatc
ctcatctgtacccactccaacagtgcggcagatctctacatccgagagttctttcatcct
tatgtggaagacaaccacccagaagcaaagccactacgtgtgttgtaccgactgcgatgg
gtgcagacggtgtccgacattgtcctggattattgtctgtgggacaagtccgtggggctg
ttccggtatcccaagctggaggacctcgagaaacacaggattgtcatcaccacactcagc
acatcgcgatacatcagtgaccttgacctaccatcaggcttcttcacccacatcttcata
gacgaggcagcacaggctctggagagtgagactctcatccctctctccatggcaggagaa
tccaccaggattgtactggctggggatcacatgcagctaagtcctgaggtgtactcggac
tacactcggcagcagggtttccactcctccctcctggagcgtctgtacgagctctaccca
gccgattccgcctgtaagatcatgctgtgtgaaaactataggtcacactcagccatagtg
gacttcacatccgagctgttctacgacaataagctgatcgccagtgggaagctgacagct
cacaacagccactacccactgacattctacgctgcaaaaggggaagagatccagcatgcc
aacagcaccggcttctacaacaactcagaggtgtatgaaattgttgaaagagttgatgaa
ctggtgaagaagtggcctgaagactggggacccattgaggagggtggcatcggagttgta
gctccttactcagaccaggttatccgtatccgagcagagatgaggaagaagaagatgtac
aatatttctgtggagcgagtgctcaacgtgcagggcaaacagtatcgtgtgatcatcttg
agcactgtacggacacgccactcttgccgttcagacacaagtgttgaggacctgatggac
tatggcttcctatcgaatgtgaagctcctcaatacagcaatcacgcgagctcagtctctc
gtcgttgttgttggcgatccagtttccctctgccttgttggcaagtgcaggaaagtgtgg
gagtactatctggagatctgcaacaacagcagcagcttccatggcatgacatggacgagt
cttcgctcacaactggatggtgcggaaatgaccaagacctatgtcctgaatcccctggct
ccagagtttgtcccgaatcgtttgttccacagctcccagtcagcagcagacgcagcaggc
cagttcctccaagggatgccccacaacatgccctggcagcacctcagtccataccatccc
atgacaacgtcttatggacactctgtcatccagccgatgtaccagcctccagtgatgccg
tactatccgatgcccatgtaccaccccggcttcttcagccccatggtctaccggccgtac
atcccacaccgtcaagggagcccagtcagtggaaggtccagttcacccaagacggtcaca
accagagctacacccatgcccccagccaatcacggcatgcgtggtcggcctgagcatggc
aagaactcaccagatggagccaaacaaggggatcatcctccatcccacatgaaggcattc
tacaagcagcctaaaggtcgcatgatggtgtatctgccgcctcggatgccgatgtcttat
ccaccatattaccaccatcccatgttccagcatcatccgtacttctacatcggggatgaa
cagcacccccacagactgtctgttcatcagcctccattcatgcctcaaggcccccgcttt
gctccctatggtccagtattgccctatggtcacccctcggggcctcaggcaggagagcga
ggtcagagctcagggccttcatctggctccaattctaatgtgtccactccaacaccaatg
gaagatgctgagatgaggagcagatcagaggatcggtcatcgccgtctgtgttggggcag
aagattcagctgatgccaggagtcaaacacgtgcctgctcacctcctgaacacagaaggg
aaagaagtggggtcaaagagtagcacacccaccactccaccccctgaggacaggcgggaa
gagaggaggtcgaccccactgtcagagagaccctacagtcctgcaaactatgggaaaatg
ccagacaacaacaaagttgagaagattaacaacagagacaacctaaatattgtttcaaat
aagaaacaagcaagaaagcaattgaaactgaaaacggggttcagtcgtcagttcagcgat
gacctgccaactcctaccgagatcacagacttggtgaggatgattgaagaaagcattgag
gagaaaaaagaggaagaggaaccactgccgaaaaacaagcctggggaactcaatggtcag
agtcgcttgtcctcactgactaaactccagctcaacttgaacaatggacaggacctgtca
gacaaaggtgcagaaccatcatctgctggcagtcagaatggagaaaagttgtcatatgca
ggagtcctcaggaagccaccattgcctcctgccccagtctcaagaaatgggtcaaatatg
gacacatctcctttgatcgaacctcaaactccccgaactccatctggcttcatcactcca
ggcaccgagatggagatggacccattcggcatcctgaagagtcttaatatcgagtcctcc
tcccctcagcatcattgctatcctcgttactaa
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integrated database retrieval system
