Haliotis rubra (blacklip abalone): 124291913
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Entry
124291913 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase ddx20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrj03041
]
124291913
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124291913
Spliceosome [BR:
hrj03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
124291913
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
AAA_30
Helicase_RecD
AAA
Motif
Other DBs
NCBI-GeneID:
124291913
NCBI-ProteinID:
XP_046584942
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MNLAHKINEKTRTGDVLISEEVDFSSLLLSKPVIQGLQNSGFERPSPIQLKAIPLGRCGL
DLIVQAKSGTGKTCVFSVIALEAIQVQSSAIQVLVLAPTREIALQIWDVINNIGSAMSAL
RCHTFIGGLPLSEDKQKLKQCQIAVGTPGRIKQLIQTNLMKTESVRLFVLDEADKLLEES
FQEQINWIYSALPDNKQMLALSATYPESLAQHLTRYMRNPTFMRLNISDPALLGIRQYYK
SVPYSPMANLAFEAKAKAVIEILSGVSFQQCLIFSNLQTRAQNLSDELQRQGWPTACIAG
SHDQKDRIEAMAKLKTYKCRVLISTDLTARGIDADKVNLVINLDVPRDHETYLHRIGRAG
RFGSYGVAVTVVSEGQEQLGLTAVERKCNTHINSLPDPLPVDLLRATVQINLDDMVSTEQ
LITRPDTGTRSCDLPVTSEESPVKDRRLEDIEDGKQNTDGEDLNLVNGRVGGGIDDGEDT
RSENICTQYPGVISDKDSSNISKGSQENVGKGSLIMTEMKTVSDMHPKKCSENAVSETLL
PNTEVIQLNLEWFPXLQENSVTNKNIQVMNSTCGRSDNNKHDLDNSEQRVSDCNINQKFD
HTKLNDSGTNILSNGRKIKTAKKCRKRKVNSDSIKEFPSDPSNEEKCVAMVTQINGQTCS
ITTNSDATTNMKASLANRQGVGTRTIGQVELTIPSYRESLGGKNLAKPHTYSSALVDYEK
FLEKGESGKMLNIPEVILRNIDLEKKHSTPGTDFVRSVADCIDKIYDCALSKPQLRGDNP
DMSDQSARDAAADVDVMQVSRVQMCSQTTQTISPAQKVNQKPKSVRYHPMSVSSLAMVDL
DLTANNNKLYLSQNVSGNKESPSVCVEELKGDTHIPDTNADYEQANLKGVGKSCSKEDEH
VLVEKRPYKIKVSNLSVNENSVGSKVQQDAVSNIATRSDCELMYVSGGVGRISLTADAIT
VEDELMRDCRPRSRKGKIMADLDGLEYGRKCGRHLPDQMYVTGEDLVSQGDTDSSDTDSS
SSSSEYDREVFRNNYVDDPLFRDSQYGNTHERTNQRRHSDHYSSGYDADYLPYDNQYVFD
EHDTTNVQYGDQGWGSKDFEPNMSDYPYDAWSQLWGNPWGYYHPHPYWYPPEYYAPPHYY
PYPYPPACYPAPYHPMWQGAWYGRVGLSDEERIDAMRKNMEYQRAYIKKMAQIK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggcacataagataaatgagaaaacccgaactggagatgtattaatttcagaa
gaagtggatttttcttcgctcctgctatcaaagcccgtaattcaaggcctccagaactcg
gggtttgaacggccatcaccaatacaattaaaagcaatcccgttgggccggtgtggacta
gatttgatagttcaagctaagtcaggaactggcaaaacatgtgtgttttctgtcattgcc
cttgaagcaatacaagtacaaagctctgctattcaagtattagtcctagctccaacaaga
gagattgctttacagatctgggatgtgatcaacaacattggcagtgccatgtcagcattg
cgatgtcacactttcattggtgggctaccattaagcgaagataaacagaaattgaagcaa
tgtcagattgctgtaggaacacctggtcgtattaagcagctgatccagacaaacttgatg
aaaactgagagtgttagactatttgtgctagacgaggctgataaacttctagaagagagt
ttccaggaacaaatcaactggatctattcagcactacctgacaacaaacaaatgttggct
ttgtcggccacttacccagaatcccttgcacaacatctgacacgctacatgcggaaccca
acattcatgagactcaatatctcggatccggcacttctaggtattcgtcagtactacaag
agtgtgccctacagtcccatggctaacttggcatttgaggccaaggcaaaggctgtcatt
gagattctctcgggcgtcagcttccagcagtgtctcatcttctccaatctacagaccaga
gctcagaacctgtctgatgaactacagagacaggggtggccgacagcctgtattgctggc
agccatgatcagaaagacaggatcgaggccatggccaaactgaaaacctacaagtgtcgt
gttctcatctccacagatctgacagctcgtggtatagatgccgataaagtcaacctggtc
atcaaccttgatgtcccacgggaccacgagacctaccttcatcgcatcgggagagcaggt
cgatttgggtcatacggtgttgcggtgacagtggtaagtgaagggcaggagcagctgggt
ctgaccgcggtggagaggaaatgtaacactcacatcaacagcctgccagaccctcttccg
gtggatctgctgagagcaaccgtccagatcaacctggatgacatggtcagtacagagcaa
ctaatcaccaggccagacacagggacgaggtcatgtgaccttcctgtgacaagcgaggaa
agtccggtcaaggacagaaggttggaggatattgaagatgggaagcagaatactgatgga
gaggacctgaatttagtcaatggacgtgttggaggaggcatagatgatggtgaggataca
aggagtgagaatatttgtacgcaatatcccggggtaatttctgataaggattcttcaaat
atctcaaaaggatcacaggagaatgttggcaaaggttcattgataatgacagaaatgaaa
acagtgtccgatatgcatccaaagaaatgttcagaaaatgcagtgtctgagaccttgttg
ccaaacaccgaagtaatacagttgaacttggaatggttcccatgactccaagagaacagt
gtgacaaacaagaatatacaagtcatgaatagcacatgtggtcgatctgataacaacaaa
catgatttagacaacagtgaacagagagtgagtgattgcaatattaatcaaaagttcgat
cataccaagttgaatgattctggaacaaatatattatcaaatggaaggaagataaagaca
gcaaagaaatgtcgaaagaggaaagttaatagtgattctatcaaggaatttccgtcagat
ccttcaaatgaagaaaaatgtgttgccatggttactcagataaatggacaaacatgtagc
attactaccaacagtgatgcaacaacaaacatgaaagcatcattagccaacaggcaggga
gttggcacgagaactatcggccaggttgagttaacaatcccaagctacagggaatctctc
ggtgggaaaaacctggcaaagccacacacttacagcagtgcgcttgttgattatgagaag
ttcttagaaaagggtgaaagtggtaaaatgttgaatattcctgaagttattttaaggaat
attgaccttgaaaagaaacattcaactccaggaacagatttcgtgaggagtgttgcagac
tgcatagacaagatatatgattgtgctctgtccaagccacagctaaggggagacaatcct
gacatgtcagatcaaagtgctagagatgctgcagcagacgtcgatgtgatgcaggtgtca
agagttcagatgtgcagccaaactacacaaacaatatcacctgctcaaaaggtcaaccag
aaaccgaagtcagttcggtatcatccaatgtctgtgtcctctcttgccatggttgacctt
gaccttactgcaaataacaacaaactgtatttgtcacaaaatgtctctggtaacaaagaa
agtccctcggtttgtgttgaagagttaaagggagatacacacattccagatacaaatgca
gattatgaacaagcaaatctgaaaggagttggtaagagctgttccaaagaggatgaacat
gttttggttgagaagaggccatataagatcaaagtcagtaatctatctgtgaatgagaac
agtgttggaagtaaggttcaacaggacgctgtgtcgaatatagcgacgaggagtgactgt
gagttgatgtatgtgtctggaggagtagggaggatcagtttgacagcagatgccatcaca
gttgaggacgagctgatgagggactgtagaccaaggtcaaggaaagggaagataatggcc
gatctggatgggcttgagtatggcaggaagtgtggacgacatctccctgaccagatgtac
gtgactggagaggatctcgtcagtcagggagacacggacagctcggacacggactcctcc
agctcaagttcagaatacgaccgagaagtgttcaggaataactatgttgacgacccactg
ttcagagattctcagtatggtaatacacatgagagaacaaaccagaggagacattctgat
cattactcctcaggatatgatgccgattacttgccctacgataatcagtacgtgtttgat
gaacatgacactacaaatgtgcaatatggtgaccaggggtggggcagtaaagatttcgaa
cccaacatgtccgactatccatatgatgcttggtctcaactgtggggaaacccatggggt
tactaccatccccacccctactggtatccccctgagtattatgccccaccccattattat
ccctacccctacccacctgcctgctaccccgccccctatcatcccatgtggcaaggggca
tggtatggaagggtaggactgtcagatgaagaacgaattgatgccatgaggaagaatatg
gaatatcagagagcatatattaagaaaatggcccaaatcaagtaa
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integrated database retrieval system
