Halobaculum rubrum: K6T25_01650
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Entry
K6T25_01650 CDS
T07963
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hrm
Halobaculum rubrum
Pathway
hrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6T25_01650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrm03019
]
K6T25_01650
03400 DNA repair and recombination proteins [BR:
hrm03400
]
K6T25_01650
Enzymes [BR:
hrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6T25_01650
Messenger RNA biogenesis [BR:
hrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6T25_01650
DNA repair and recombination proteins [BR:
hrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K6T25_01650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HHH_5
HHH_2
Pribosyltran
RecQ_Zn_bind
AAA_30
zf-C2H2
IMS_HHH_1
ETF
HTH_45
CASP_C
zf-C2H2_jaz
zf-C2H2_4
Motif
Other DBs
NCBI-ProteinID:
QZX99841
LinkDB
All DBs
Position
310904..313684
Genome browser
AA seq
926 aa
AA seq
DB search
MSEPQSPLTDIPAVGATRSKRLQEAGFATISDIGDAETNELANVPAINPDIARCVRQGAR
ELRGDDDTIQNQIATDCGVPREAVAEAFAEIAYRGGSFETKRTALREVFCKANEESILHL
NGHSLRFLFLLYNAGFRDLDAVASASLSELINVSYFDKQRAQEVRATARNAKADMRGRSS
EEQSSEEGVGTEFICEECGETFESESHIQQHSHRNTEAKDASRQSDSNPGGTSFETSPRV
TRDQAQKLLEESIGPEAEFRPQQREAISRLVNQKERLFIVQRTGWGKSTVYFIATRLLRD
QGSGPTLIISPLLSLMRNQISNAEQHLNLNAITINSNNEGEWDEAKRAVIEGNCDLLLIS
PERLANPEFRQDVLNEMEQGFGMLVIDEAHCISDWGHDFRPDYRRIKRIIKRLPENIPVA
ATTATANDRVVEDVTTQLPDLNPIRGTLVRDSLKIQTINLGSRERRLAWLAENVTETPVS
GIIYCLTTNEVEQVADWLTDQGLDVLPYHGRLDNEVRREREQKLLDNEVDALVATNALGM
GFDKPDLGFVIHFQRPPNLIRYYQEIGRAGRDIDEAYAILLSGEEDDDIAEYFIESAFPE
PEDFESVLSTIGTSDGPVYRRAILRRTDISWRRMNKCLDILQVEGAISREDEGYVRTANS
WQYDYERFEQVTERRWEELERIKEFVRTDECLTQFVDDELDGDLEEPCGHCANCAGNFLP
SAVQNEELIQEAIEHYQSEGWNVIEPRKQRHKQGGGRERIPERVRMEAGRALCVWDDPGW
GTDVREGKYEQGRFGDDLVEAAAAFIREEWNPSPEPKWIAAVPSTSTEGVVTDFASRLAE
KLDIPFIDRIKKVENTRPQKDMENSYQKCWNVEGAFNTTDEVRGDAVLLVDDVVASKWTL
TETAKELRLAGSGPVYPFALAKRRGG
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagcctcaatcaccactgactgatatccccgctgtcggagcaactcgttcgaag
cgtctccaagaggcgggatttgcgaccatttccgacattggcgatgcagaaacaaatgaa
ctggccaatgtcccggcgataaacccggatatcgcacgctgtgtcaggcagggagctagg
gagttacggggtgatgatgacacgattcagaaccagatagcgaccgactgcggtgtgccg
agagaagcagtcgccgaagcgttcgccgagatcgcttatcggggagggtcgttcgagact
aaaagaaccgccctccgggaggtgttctgcaaggctaatgaggaatccatcctgcacctc
aacggacactcgctaagatttctttttctgctgtacaacgccggctttcgtgatctcgac
gccgtcgcgagcgcctctctcagcgagctcattaacgtaagttacttcgataaacagcgg
gcccaagaggtcagagcaaccgcacgcaacgcgaaggccgacatgcgggggcgctcctct
gaggaacagtcgagcgaggaaggcgtcgggacggagttcatctgcgaggaatgcggcgaa
acgttcgagtccgaatcccatatccaacagcacagccaccgcaataccgaagctaaggac
gcatctcgacagtccgactcgaatccgggaggtacgtccttcgaaacgtcaccacgcgtt
acaagggatcaggcgcagaaactccttgaagagagcatcggccccgaggccgagttccgg
ccacagcaacgggaggccatcagcagactggttaaccagaaggaacgcctatttatcgtc
cagcgaacggggtgggggaagagcaccgtttactttattgcgacacggttgctccgagac
caaggttcagggccgaccctcatcatcagtccactcctatcgctgatgcgaaatcaaatc
tcgaatgccgaacagcacctgaacctcaacgcaatcaccatcaactccaacaatgaaggg
gaatgggacgaggccaaaagggcggtgatcgaggggaactgcgatttgctgcttatatca
cctgaacgactcgcgaatccggaattccggcaggatgtcctcaacgagatggagcaggga
ttcgggatgctcgtcatcgacgaggcccactgtatctccgactggggccacgacttccgc
cctgactatcggcgtatcaagcgcatcatcaaacggttgccggagaatatcccggtcgct
gcaacgaccgcgacggcgaacgaccgggtggtcgaggacgttaccacacaactcccagac
ctaaacccgattcgcggcacgcttgtccgcgactcactcaaaatccagacaatcaacctg
ggctcccgggaaaggcgcctggcgtggctagccgaaaacgtgaccgaaaccccagtctcc
ggcatcatctactgtctcaccaccaatgaggtcgaacaagtcgccgactggttaaccgac
cagggcctcgacgtcctcccgtatcacgggcggctcgacaacgaagtccgccgagagcgc
gaacagaagctcctggacaacgaagtcgacgctctggtcgcgaccaacgcgctcggaatg
ggattcgacaaacctgatctcggcttcgtcatccacttccagcgtccacctaacctcatc
cgatactatcaagaaatcggacgtgccgggcgagacatcgacgaggcgtacgccatcctc
ctttctggcgaagaagacgacgacatcgccgagtacttcatcgagagcgcatttccggag
cccgaggatttcgagagcgtgctctcgacaatcgggacgagcgacgggccagtttatcgc
cgcgcgatcctgagacggacggacatcagctggaggcggatgaacaagtgcctcgatatc
ctccaggtggagggagccatcagcagggaggatgagggctatgtgagaactgcaaactcg
tggcagtacgactacgagcggttcgagcaggttacagaacggcgttgggaagagctcgaa
cgaattaaagagtttgtcagaacggatgagtgcctcacccagttcgttgatgacgaactc
gacggggacctggaagagccctgcgggcactgtgcgaactgcgccggcaacttcctccca
tccgccgttcagaacgaggagttgattcaggaggcaattgagcactaccaaagcgaggga
tggaacgtgatcgagccccgaaagcagcggcacaaacaaggtggcggtcgcgaacgaatc
cctgagagggtacgcatggaggctggtcgggcactgtgtgtctgggacgaccccggctgg
ggaacggacgttcgggaaggcaagtacgaacagggccgcttcggcgacgatctcgtcgag
gcagccgccgcgttcatccgtgaggaatggaatccatccccggagccgaagtggattgca
gctgtgccctcgacatcgaccgaaggagtggtcaccgacttcgccagccggctggcagag
aagttggacattccatttatcgatcgcatcaagaaggtggagaacacgcgtcctcagaag
gacatggaaaactcgtaccagaagtgctggaacgtcgagggggcgttcaatacaaccgac
gaagtccgcggcgatgcagtccttctcgtcgacgacgtagttgcatccaagtggacgttg
acagagacagcaaaggagcttcgcttggccggaagtgggccggtatatcccttcgcctta
gccaagcgccgaggcgggtaa
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