Halobaculum rubrum: K6T25_09480
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Entry
K6T25_09480 CDS
T07963
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hrm
Halobaculum rubrum
Pathway
hrm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
K6T25_09480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrm03019
]
K6T25_09480
03009 Ribosome biogenesis [BR:
hrm03009
]
K6T25_09480
04131 Membrane trafficking [BR:
hrm04131
]
K6T25_09480
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrm04147
]
K6T25_09480
Messenger RNA biogenesis [BR:
hrm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
K6T25_09480
Ribosome biogenesis [BR:
hrm03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
K6T25_09480
Membrane trafficking [BR:
hrm04131
]
SNARE
SNARE associated proteins
Others
K6T25_09480
Autophagy
Aggrephagy
Other aggrephagy associated proteins
K6T25_09480
Exosome [BR:
hrm04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
K6T25_09480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
AAA_7
Mg_chelatase
AAA_18
DUF815
NB-ARC
ATPase
Sigma54_activat
ABC_tran
AAA_3
nSTAND_NTPase5
AAA_lid_PRS2_C
TsaE
AAA_17
Parvo_NS1
AAA_11
AAA_30
AAA_24
Zeta_toxin
ResIII
AAA_19
NACHT
SLFN-g3_helicase
PhoH
Vps4_C
IPT
Motif
Other DBs
NCBI-ProteinID:
QZX98513
LinkDB
All DBs
Position
complement(1831325..1833550)
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEAKKAEKLTLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVDTEPEGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLQSEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLETRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEV
GRKEILQIHTRGMPLSDDVGLDRLADETHGFVGADIENLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIVKRDDFQGALSEVEPSAMREVLVELPKVTWEDVGGLDEAQQQVKEAVEW
PLRTPEKFERMGVEAPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVAPTIVFFDELDSLAPSRGQDMGNNVSERVVNQLLTELDGLEEMENV
MVIGATNRPDMIDPALIRSGRFDRLVMIGQPDEEGREQILKIHTDDTPLSADVSLRELAE
RTEGYVGSDLESVGREAAIQALREDDDAEEVNMRHFEQAMETVRPTISDEIMSYYADIEE
QFKGGGTDSLRTDRGGRVGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtccaactcgaagtcgcgaaggcgtacccgaacgactccggccgggggatc
gcccgcctcgacccggacaccctgctgcacctgaagctctctccgggcgacatcatcgag
atcgagggggcggaaaccaccgccgcgaaggtgtggcgcgccgaccggcaggactggaac
accgacaccgtccgcatcgacgggttcacgcgccagaacgccgacgtcggcatcggcgaa
cgcgtcacgatccggaaggccgaggcgaagaaggccgagaaactgacgctcgcgccgccc
gaggaggcgtcggtgcagttcggctccgacgccgccggcatggtgaaacgccagatcctc
aagcgcccggtcgtcgagcgcgacatcgtccccgtgatgtcctccacgaaccacccgttc
atgcgctcgccgggacaggcgatcccgctcatcgccgtcgacaccgagcccgagggcgtc
tgtctcatcaccgaggacaccgaggtcgaactccgcgaggagccgatctcggggttcgag
aagaccggcggcggcatcacctacgaggacatcggcggcctccagtcggagatccagcgc
gtccgcgaaatggtcgaactgccgatgaaacacccccagatattcaagaagctggggatc
gagccgccgcagggtgtcctcctgcacggcccgcccggcaccgggaagacgctgctggcg
aaggccgtcgccaacgagacctccgcgagcttcttctccatcgccggccccgagatcatc
tccaagtactacggagagtccgaacaacagctccgggagatcttcgaggacgcgaaagac
gagagtcccagcatcatcttcatcgacgagctggactccatcgcgcccaaacgcgaggac
gtgaccggcgaggtcgagcgccgcgtcgtcgcccagctcctcacgatgatggacggactg
gagacgcgcggacaggtgatcgtcatcgccgcgacgaaccgcgtcgacagcgtcgacccc
gcccttcgccgccccggtcgcttcgaccgcgagatcgagatcggcgtccccgacgaggtc
ggccgcaaggagatcctccagatccacacccgcggcatgccgctgtcggacgacgtcggc
ctcgaccgcctggccgacgagacccacggcttcgtcggcgccgacatcgagaacctcacg
aaggaggcggcgatgaaggccctgcggcgctacctcccggagatcgacctcgacgaggag
gacatcccgccgagcctcatcgaccggatgatcgtcaagcgcgacgacttccagggcgcg
ctttccgaggttgagccctcggcgatgcgggaggtgctcgtcgaactcccgaaggtcacg
tgggaggacgtcggcggcctggacgaggcccaacagcaggtgaaggaggcggtcgagtgg
ccgctgcggacgcccgagaagttcgagcggatgggtgtcgaggccccgaagggggtgctc
ctgtacggcccgcccggcaccgggaagacgctgatggcgaaggccgtcgccaacgagacg
aacgcgaacttcatctcggtgcgggggccgcagctgctctcgaagtgggtcggcgaatcc
gagaaggcgatccgccagacgttccgtaaggcccggcaggtggccccgacgatcgtcttc
ttcgacgagctcgactcgctggcacccagcaggggccaggacatggggaacaacgtctcc
gagcgcgtcgtcaaccagctcctgaccgaactcgacggcctcgaggagatggagaacgtg
atggtgatcggcgcgacgaaccggcccgatatgatcgacccggcgctcatccgctcgggg
cggttcgaccgcctcgtgatgatcggccagcccgacgaggagggccgcgagcagatcctc
aagatccacaccgacgacacgcccctgagcgccgacgtgagcctgcgcgaactcgccgag
cgcaccgagggctacgtcggatccgatctggagtcggtcggccgcgaggcggccatccag
gcgctccgcgaggacgacgacgccgaggaggtgaacatgcgccacttcgagcaggcgatg
gagactgtccgaccgacgatctccgacgagatcatgagctactacgccgacatcgaagag
cagttcaagggcggcggcaccgacagcctccgcaccgaccgcggcgggcgggtcggcttc
caataa
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