Halobaculum rubrum: K6T25_10345
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Entry
K6T25_10345 CDS
T07963
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hrm
Halobaculum rubrum
Pathway
hrm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hrm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
K6T25_10345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrm03021
]
K6T25_10345
Transcription machinery [BR:
hrm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
K6T25_10345
Prokaryotic type
Archaeal type
TFB
K6T25_10345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Zn_ribbon_LysW
A2L_zn_ribbon
Zn_ribbon_PaaD
Ribosomal_S27e
Cyclin_C
Zn_Ribbon_YjdM
Cyclin_N
Sigma70_r4
Zn_ribbon_Elf1
Zn_ribbon_InsA
DUF5816
Motif
Other DBs
NCBI-ProteinID:
QZX98675
LinkDB
All DBs
Position
complement(2001688..2002644)
Genome browser
AA seq
318 aa
AA seq
DB search
MEGPSRQRQREAGESETQSDEELTCPECSSDDVVMDADQGELVCDDCGLVLDERQIDRGP
EWRAFNHSERQSKSRVGAPVTETMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQ
ERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVAT
AALYAACRQEGIPRSLDEVAEVSRVEQKEIGRTYRYISQELGLELKPVDPKQFVPRFASA
LGLSEETQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVT
EVTIRNRYQEQIEAMGFR
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtccgagccgacagcgacagcgagaggcgggcgagtcggaaacgcagtcggac
gaggagctcacctgtcccgagtgctccagcgacgacgtcgtgatggacgcggaccagggg
gagttggtctgtgacgactgcggtctggtgttggacgagcgccagatcgaccgggggccg
gagtggcgggcgttcaaccactccgagcggcagtcgaagtcgcgggtgggcgcgcccgtg
accgagaccatgcacgacaagggtctcacgaccaccatcgactggaaggacaaggacgcc
tacggtcggagcctctcctcggaaaaacgctcccagatgcaccggctgcggaagtggcag
gagcgcattcgcaccaaggacgccggcgagcgcaacctccagttcgcgctctcggagatc
gaccgcatggcctccgcgctgggcgtcccccggtcggtccgggaggtcgcctccgtcatc
taccgccgcgcgctcaaggaggacctcatccgcggccgctccatcgagggcgtcgccacg
gcggccctgtacgccgcctgccgacaggagggcatcccccgctcgctcgacgaggtcgcg
gaggtttcgcgagtggaacagaaggagatcggccggacgtaccgttacatctcccaggaa
ctgggcctcgagctcaagccggtcgaccccaagcagttcgttccgcgcttcgcctccgcg
ctcggcctcagcgaggagacgcaggcgaaggcgaccgagatcatcgacgtgtccgccgag
cagggactgttgtcggggaagtcgcccaccggcttcgcggccgccgcgatctacgccgcg
tcgctgctgtgtaacgagaagaagacccagcgcgaagtcgccgacgtggcgcaggtcacc
gaggtcaccatccgcaaccgctatcaggaacagatcgaagcgatgggcttccgctga
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