Helobdella robusta: HELRODRAFT_101329
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Entry
HELRODRAFT_101329 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hro
Helobdella robusta
Pathway
hro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HELRODRAFT_101329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hro03021
]
HELRODRAFT_101329
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_101329
Transcription machinery [BR:
hro03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HELRODRAFT_101329
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HELRODRAFT_101329
U7-dependent histone pre-mRNA processing factors
HELRODRAFT_101329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
20194493
NCBI-ProteinID:
XP_009021871
JGI:
Helro1_101329
UniProt:
T1ED40
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MAAKKKSALPIEDSDQLVIRPLGAGQEVGRSCLLLEFKGKKILLDCGIHPGMNGLDALPY
FDLIQDELQNVNLMLISHFHLDHCGALPWFLQKTPFKGRCFMTHATKAIYRWLLSDYVKV
SNISADKMLYVEKDIEESMDKIETVNFHQEIDISGIKFWCYNAGHVLGAAMFMIEIAGVK
VLYTGDFSRQEDRHLMAAELPNVKPDVLIVESTYGTHIHEPREEREQRFTNLIHNIVSRG
GRCLIPVFALGRAQELLLILDEYWSAHPELQEVPIYYASSLAKKCMSVYQTYIHAMNERI
KKQIAVSNPFIFKHISNLKNADHFEDIGPSVVLASPGMMQSGLSRELFESWCNDKKNGVI
IAGYCVEGTLAKHILSEPEEIVTMNGQKLPLRCSVDYISFSAHTDYQQTSEFIRILKPAH
CVLVHGEQNEMSRLKAALIREYEDSTDYKINVHNPRNGQAVELLFRGEKLAKIVGQLAVQ
KPKQDEKISGVLVKKNFNYHIMHPSDIPNYTDLITCNVQQRLSVPYNGSLAQLQYHLNKI
ATDIELIKREATILVFKSILVTLEKKMAVLEWTSSMTNDMFADTIIMVILKAESDSAIQK
LAIECTEADIESKENKFSRKAVQLMIDMFGEECKPTIEPEETLTMTVDDCPVSIHLKTLN
VKCSNDLLHQMITTAVTKLNHVLTAC
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaaaagaagtcagcgttacccatagaagacagtgatcaattagtaattagg
cctttgggggccggtcaggaagttggacggtcttgtttgctactggaattcaaaggcaag
aagattctactcgattgtggaatccatccagggatgaatggattagatgcactaccatat
tttgacctcatccaggatgaattacagaatgtcaatttgatgttgatcagtcatttccat
cttgatcattgtggggccctgccttggttcttacagaaaacgccatttaaaggaaggtgc
tttatgacccatgcaacaaaagccatctacagatggctcctctcagattatgtcaaggtc
agtaacatatcagctgacaaaatgctctatgtagaaaaagacatagaggaaagcatggac
aaaatagaaactgtgaacttccatcaagaaattgacatcagtggcataaagttctggtgc
tacaatgctgggcacgtcctaggagccgccatgttcatgattgaaatagccggtgtcaaa
gtattatacactggggatttcagtaggcaagaggataggcatttaatggctgctgaactg
cctaatgtcaaaccagatgtcctgattgttgagtcaacatatggaacccacatccatgag
cctagggaagagagggaacaaagattcactaacttgattcacaatattgtttctcgtggt
ggtagatgtctcattccagtctttgctcttggaagagctcaagagcttctgttgattcta
gacgaatactggtcagcccaccccgagcttcaagaggttcccatctattatgcatcatca
cttgcaaagaaatgcatgtcagtctatcaaacatacatccacgccatgaatgaacgaatt
aaaaagcagattgctgtttccaaccctttcatattcaagcacatctccaacctgaagaat
gccgaccactttgaggacattgggccctctgtggtcctggcaagtcccggcatgatgcag
agtggcttatcaagagagctgtttgagtcctggtgtaatgataaaaaaaatggagttatt
attgccggatactgtgttgaaggcactctagctaaacatatcttatcagaacctgaagaa
atcgtcacaatgaatggacagaagttgcctctgagatgttctgtagactatatttcgttt
tcagcccacactgactatcaacagactagtgagtttattaggattctgaagccagcacac
tgtgtcctggttcatggcgagcaaaacgagatgagtcgactgaaagctgcactaattaga
gagtatgaagattctactgattacaaaatcaatgttcataatccaaggaatggacaggct
gttgagctgctattcagaggtgagaagctggccaaaatagtagggcagctagctgtccag
aaaccgaaacaagatgaaaagatatcaggtgtcctggtgaagaagaacttcaactaccac
atcatgcatcccagcgacattcctaactacactgacctcatcacgtgcaacgtgcaacag
aggcttagtgtcccatacaatggtagcctagcccagctacagtatcaccttaataagatt
gccacagacatagaattaataaagagagaagctacaattttagtatttaaatccatatta
gtgacattagagaaaaaaatggctgtcttagaatggacttcgagtatgaccaacgatatg
tttgcagacactatcatcatggtcatactcaaggccgagtccgattccgctattcagaaa
ctcgcaatcgagtgtacagaagcggatatagagagtaaagagaataaatttagtaggaag
gcggtgcaattaatgattgacatgtttggggaggagtgcaaaccgactattgaacctgaa
gaaacactaaccatgaccgtcgacgactgtccggtgagtatacatctgaagactttaaac
gtgaaatgctcaaatgatttgttgcatcagatgataacgacagccgtaactaagttgaat
catgttttaactgcgtgttga
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