Helobdella robusta: HELRODRAFT_102116
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Entry
HELRODRAFT_102116 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12385
Niemann-Pick C1 protein
Organism
hro
Helobdella robusta
Pathway
hro03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
hro04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
HELRODRAFT_102116
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
HELRODRAFT_102116
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hro02000
]
HELRODRAFT_102116
Transporters [BR:
hro02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
HELRODRAFT_102116
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
20194533
NCBI-ProteinID:
XP_009024564
JGI:
Helro1_102116
UniProt:
T1ED81
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MCPDLVDDLSDVRTCCDAEQIALMNRKMEVARTILSRCPPCLRNFQNLFCHLTCSSNQSD
FMTVTSYDNISFVGEISYYISSNFTNSTFASCKDVQSPSSGQKAMSLMCGSAGESCTPKV
WLDFLGMKGVSPFQINFKITVEDEVVENNKTYHPMNAQTTPCVGICLCQDCNSSCFPERP
CPARQQWLILGHDGVYMATAFAFVIFLLIFIIILVCFYFQSNFQSIKKPSPSSCSFRSIL
PTFSNPTCMEKLQVKVEEFLEKSFANWGRFCARRRWLVVVASILVCAALTSGVFRFKVVT
DPVELWSSPESQARKEKDYFDANFSPFYRTAMLIVKPKNMSNWKTSGALIREVGPALRQD
VLYEVLSLQNKIKSLVGSVNVKSEGSTVATKNVTLGDICFSPLSPDNNNCTIMSALNYFQ
NDNDTLNEVVENYFFVTGDFIKHFIKLCRSPISVNETSIGKSCLADFGGPINPYAAFGGF
PGKDFLLSKALVVTYVINNFKKDNFQEQALAWEKEFLAFMSSYKSDLIEVDFNAERSIED
ELDRESKSDVSTILISYLIMFAYVSITLGSYHKCSTILVDLKISLGLFGVVIVLLSVSSS
VGFFSYLNVPATLIIIEVVPFLVLAVGVDNIFILVQAFQRLDYKEGMNVEDMVSTVVGKV
GPSMLLTSLSESLAFFLGALTPMPAVRVFSLYAAMAVLIDFLLQISFFVSLMTFDAIRHY
SGRPDICCCVPVLRDDNPSLLRASSRHGVVFEFVKKRMSKVLLNKYVRPIIMIIFVGWSC
LCFAVIHKIEIGLDPKLSLPEDSYVLRYFESMEKFLSIGSPLYFVVGEDFDYVSQDGQNQ
LCGSSGCASNSLLSEIFEATRQPNCSFISNVPSSWIDDYYDWTAPGSPCCRQFVNNGSFC
KSSVNSSECIKCPIQRYNETQRPLGDDFTKYIPWFLKDNPTVACPKGGHAAYGSAVKLGK
DKKNDTKIGASYFMTYHKVLNSSQDFIGALKYARELGENITKSIHNWNNTELYAGKSDQT
KSRNISQSVFPYSVFYIFYEQYLTLKKNAIMNIATSILAVFIVTFILLGFDLFISIIVMI
TVSMTTISLFGLMYFWNIDLNALSLVNMVMCVGISVEFCSHIARTFALSSLSSRMDRTRE
ALVYMGSSVLSGITLTKLGGIIVLAFSKSQLFQVFYFRMYLGIVFFGALHGLLFLPVLLS
YCGPSVNRARVKRDMKLSVVNEGADNNDESACAIDDDDPSKASLSKSNQNDMSPANIYHI
IYDGR
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccagatttagtagatgacttatcagatgtcagaacatgttgtgatgccgaacaa
attgcattgatgaataggaaaatggaagttgcaagaactatcttgtcaagatgtccccca
tgtctaagaaatttccaaaatcttttctgtcatttaacttgtagttccaatcaaagtgac
ttcatgacagtcactagctatgataatataagcttcgtgggtgaaatatcatactacatc
tcttccaacttcactaattcaacatttgcatcatgtaaggatgtacaaagtcccagctct
ggtcagaaagctatgtcacttatgtgtggttcagctggtgaatcttgtactcctaaggtc
tggctggattttcttggaatgaaaggggtgtctccatttcaaataaactttaaaataaca
gtggaagatgaagttgtagaaaataacaagacttaccacccgatgaatgctcagaccact
ccctgtgttggcatatgtctttgtcaggactgtaacagttcttgctttcctgagaggcca
tgtcctgctagacaacaatggttgatacttgggcatgatggagtctacatggcaactgca
tttgcttttgttatatttcttctcatcttcatcatcatattagtatgtttttattttcaa
tcaaatttccaatcaattaaaaaaccatcgccaagttcatgcagttttagatcaattctc
cctacattttcaaatcctacatgcatggagaagctgcaggttaaagttgaagaatttctt
gaaaagtcatttgctaactggggaaggttttgcgccagaaggcgttggttggtagtggta
gcatctattttagtttgtgctgcactaacatcaggtgttttcaggtttaaagtagttaca
gatcctgttgagttgtggtcttctccagagagtcaggctcgtaaagagaaggattatttt
gatgcaaatttctccccattctatcgaacagcaatgctgatagtcaagcctaaaaatatg
agcaattggaagacaagtggtgcattaattcgtgaagttggacctgcgctgagacaagat
gttttatatgaagtgctaagtctgcaaaataagattaagagtcttgttggtagtgtgaat
gtgaagagtgagggatctactgttgcaacaaaaaatgttacgttgggtgatatttgtttc
tcacccctctctcctgacaacaataactgtacaataatgtctgctcttaactactttcaa
aatgacaatgatactctcaatgaggtggtagaaaattacttcttcgtcacaggagacttc
atcaagcattttataaaattgtgcaggagtccaatttcagtaaatgaaacatcaattggg
aaatcctgcctggctgattttggaggtcctatcaatccttatgctgcttttggaggattt
ccaggaaaagactttttgttgtcgaaagccctcgtagtaacatacgtcatcaacaacttc
aagaaagataatttccaagaacaagcattagcctgggagaaggaatttcttgcattcatg
tcatcttacaagagtgatcttattgaagttgattttaatgcggagagatccatagaggat
gaattggatagagagagtaagtcagatgtgtctaccattctcataagctacctaatcatg
tttgcttatgtatcaatcacacttgggtcgtatcataagtgttctacaattttggttgac
ctgaagatatcgctaggactattcggagtggtgattgtattgttgtcggtgtcatccagt
gtcggatttttcagctatttgaacgttcctgctactttaattatcattgaagttgtgcca
ttccttgtgttagctgttggtgtggataacatttttatcctcgttcaagcatttcagaga
ttggattataaagaaggaatgaacgtagaagatatggtgagtaccgtcgttgggaaagta
ggacccagcatgctgctcactagtttatctgaatcattggctttcttccttggtgcactg
actcctatgcctgctgttcgtgtgttcagtttgtatgctgctatggctgttctcattgac
tttcttctacaaatatcattttttgtcagtctcatgacttttgatgctattaggcactat
tctggtcgaccagatatatgttgctgtgtgccagtattaagggatgataatccttcacta
ttgagggcttcatctaggcatggtgttgtctttgaatttgtcaagaagagaatgtcaaaa
gtgcttctcaacaaatatgtcagacccataataatgatcatatttgttggttggtcatgc
ctctgttttgcagtgattcacaaaattgaaataggactggatcccaagttatcacttcca
gaggactcctatgttttgaggtattttgaatctatggaaaaatttctttccattggatct
ccattgtactttgttgtcggtgaagattttgattacgtttcacaagatggacagaatcag
ttgtgcgggtcaagtggctgtgcctcaaattcacttttgtcagaaatatttgaagcaacc
aggcagccaaattgttcttttatatcaaacgttccgtcatcttggattgatgattattat
gattggactgctcctggcagtccttgttgcagacaatttgtgaacaatggatcattttgc
aagtctagtgttaacagcagtgaatgtatcaagtgtccaatccaacgatataatgaaacg
cagaggccattaggtgatgacttcacaaaatacataccttggtttcttaaggataatcca
acagttgcttgtcctaaggggggtcatgcagcctatggatcggctgtaaaacttggcaaa
gacaaaaaaaatgacacaaaaataggtgcatcatacttcatgacttatcacaaagtgctc
aatagttcgcaagattttattggtgctttgaaatatgctcgagaactaggcgaaaacata
acaaaatcaatacacaactggaacaatacagaattgtatgctggtaaatcagatcagacc
aagtccagaaacatttctcagtctgtctttccatatagcgtcttttatattttctacgaa
caatatttaacactgaaaaagaatgccatcatgaacattgccaccagcatattggcggtc
ttcatagttacatttattctactcggatttgacttgtttatttctatcattgttatgata
acagtctcaatgacaacaattagcttgtttggtttaatgtacttttggaacattgatttg
aatgcactatcattggttaatatggtcatgtgcgtcggcatatccgttgagttctgttcc
cacattgccaggacattcgcactatcgtcactatcttccaggatggacaggactagggaa
gcactggtttacatgggcagttctgtattaagcggcatcacgctgacaaagttaggaggc
atcattgttctggctttttcaaaatctcaactttttcaagtattctacttcaggatgtac
ctgggaatcgtcttttttggcgccctccatggattgctttttttaccagtgctacttagt
tattgtggtccttccgtaaatagagccagagtcaaaagggatatgaaactgtccgtagtc
aatgaaggtgctgacaacaacgatgaaagtgcttgtgcgatcgatgatgacgatccttct
aaagcatctttatctaaaagcaatcaaaatgacatgagtcctgcaaatatatatcatatt
atctacgatggacgataa
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integrated database retrieval system
