Helobdella robusta: HELRODRAFT_103772
Help
Entry
HELRODRAFT_103772 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
hro
Helobdella robusta
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hro03036
]
HELRODRAFT_103772
Chromosome and associated proteins [BR:
hro03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
HELRODRAFT_103772
microRNA pathway
RISC loading complex
HELRODRAFT_103772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
CED4_WHD
dsrm
BUD22
Motif
Other DBs
NCBI-GeneID:
20194626
NCBI-ProteinID:
XP_009029520
JGI:
Helro1_103772
UniProt:
T1EDH4
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MTSSEFQKHEEVLRKFRQQELNLLVTTNALQTGIDLPKCNLVVRFSPASSYKSYVQSKAR
ARSNIAKFVHLVDSHLKDQFGSDIKMYKGVEKILYHRCRHYRHNINRHIPNRDVISAKFP
PYIAPNCLTLPHPPKVTVLTAIKLVNKYCARLPSDNFTHLTPKCEITEHYYDKNVKMYKA
RLKLPINSSVKQTVEGPPMPDEQQAKMAVALEMCKVLHQSEELDDNLQPIGKEILPLKRS
RDSDEDDDDGGYEPGSTKRKQHYRKRVARALLGSVRPNAPCHLYAFNMTLTGPISEEQNT
RGRIIHAPEDTSKGFGVLVPRSLPKIPHFPVFTRSGEVTVSVDPMTPSNLHSDLHFDSDQ
LKRLYAFHKFLFSDVLKLEKCPMIFDPERAKSCCIVVPIDRGHSDEHHLAKQQSDHLVKQ
QDAGRLNAQQQLQEQQQNFKFRVEDFIDAVVTPSYRNVDQPQYFYVAEIRRDLSLTSPFP
SPELYETFRHYYSTKYNLHLTDHTQPLLDVDHTSARLNLLTPRYVNQKGVPLPTTSAENR
RAKRESLQQKQILVPELCYIHPFPASLWRKAVCVPTILYRVNYLLLAQELLERIAKEAGV
YACVRVCVCVRVCVCMCVTITNQPITPIKPNNHIDHLQINQSHQPTANQPIIHNPTNHKQ
GLSFKKNGNSQALQFRFAKDGEASSTFCGGCGFGDDDDNNDDDAAAATTTTATTNTAFTS
MYGPGACDVIQTLTMSNANDFFNLERLETIGDSFLKFAITAYLYCTYSGIHEGKLSYLRS
MQVSNYNLYRLGKRKGLPGLMLAAKFEPLENWLPPCYVLKRADPKSYIWNWKEQDGISQS
DKNRTDDDDDGVDDVCGGVGKRGDDNDEDEEEEEDDEDEADFFFINNVSDKDDDDEDEDA
YDDDDDDDGGDDFGGKTTSAAAAVACKNAAANNNNTTTTTTSSNNNNLLIPYNLQTQHSL
PDKSIADCIEALIGCYLACSGQNSALKLMLWMGLKVLPVSSSNDRSGDHSSDHSNDHSGS
SKDNFSNNANFLTSPPSPLLRHFEKSIGYKFKDRSYLLQAFTHASYHYNEVTDCYQRLEF
LGDAILDYVITKHLFKDSIEHSPGILTDLRSALVNNNIFALLAVKWNFHKFLKYIGPQLF
YVISRFVSWFNEQGEDAILDELEGESHNPLDADNDDEAQPPTNNRNNNNQPACELEDIEI
PKVLGDIFESVAGAIYLDANLSLDVVWKVYKRLMDKYITAFLEKIPKSPVRELLEAEPET
AKFEKPERTIDGRVRVCVNVVGKGSFRGIGRNYRIAKTAAAKRALKYIKMISGSSC
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgagtgaatttcagaagcacgaggaggtcttaaggaagtttaggcagcaagag
ttgaatcttctggtgactacgaatgccctgcagacgggcatcgatctacccaagtgcaat
ctagtcgttcggtttagtccggcttctagctacaaatcttatgtccagtctaaggccaga
gcgaggtcgaacatagcgaagtttgttcatctggttgacagccatttgaaggatcaattc
gggagtgatataaaaatgtataagggagtcgaaaagatactgtatcatcgctgccggcat
tatagacacaacatcaaccggcacattcctaatcgtgacgtcatcagcgccaagttcccg
ccttacatagcccccaactgcctaactttgcctcatccgcctaaggttacggtactgacg
gccatcaagttggtgaataaatattgcgccagactgccaagcgacaattttactcatttg
acgccaaaatgtgagatcaccgaacattattacgacaaaaatgttaaaatgtataaggcc
cgactcaaacttcctataaattcgtctgtaaagcagacagttgagggcccgccaatgcca
gacgagcagcaggccaaaatggcggttgcattggagatgtgtaaagttctccaccaatca
gaagaattggatgataatctccagccaataggaaaagagatcttgccactgaagagaagt
agagatagtgatgaggacgatgatgatggcggttatgagccaggctcaacaaaacgcaag
cagcactatcgcaaacgtgtggccagggcccttctgggctcggttcggcccaatgcgccc
tgccacctctacgccttcaacatgaccttgaccggaccgatttcagaggagcagaacacg
agaggcaggatcatacacgctcccgaagacaccagcaagggatttggagttcttgttcct
aggtccttgcccaagataccccactttccagtgtttacgaggtcaggagaggtcactgtg
tcagttgaccccatgaccccatctaacctacattccgaccttcatttcgattctgaccag
ttgaagaggctttatgcttttcataaatttttattctcagatgtattaaagttggaaaaa
tgccccatgatctttgacccagagagagcgaaatcatgctgcattgtggtgcccatcgat
agaggccactcagatgaacaccatctcgctaaacaacaatctgatcatttagtcaaacaa
caagatgctggacggctaaatgctcagcagcagctacaagaacaacagcaaaatttcaaa
tttagggtcgaagatttcatagatgctgtagttactccatcttataggaatgtcgaccag
ccacaatatttctatgtggctgaaataagacgtgacctctccctgaccagcccctttccc
tcccccgaactctacgagaccttccgccactactactccaccaagtacaacctccacctc
actgaccacacgcagccacttctcgacgtcgaccacaccagcgcccgtctcaaccttctc
acaccgagatacgtcaatcaaaaaggtgtccccctgccgactacaagcgctgaaaatcgt
cgcgcgaagcgcgagtcgctacagcagaagcagattctagttccggagttgtgctacatc
catccatttcccgccagtctctggcggaaggccgtctgcgtcccgaccattttgtatagg
gtgaactatttgctactggcgcaagaactacttgaaaggattgcaaaggaggctggtgtg
tatgcgtgtgtacgtgtgtgtgtgtgtgtacgtgtgtgtgtatgtatgtgtgtgaccatt
acaaaccagccgatcacaccaatcaaaccaaacaatcacatcgatcatttacaaatcaac
caatcacatcaaccaaccgcaaaccaaccaatcattcataacccgaccaatcacaaacaa
ggtctatccttcaagaagaatggaaattctcaagctctgcagtttcgttttgcaaaagat
ggcgaggcttcatcaacgttctgtggcggttgtggtttcggagatgacgacgacaacaat
gatgatgatgctgctgctgctactactaccactgctactactaacactgcttttacttcc
atgtatggtcctggagcttgcgacgtcatacaaacactgaccatgtccaacgctaatgac
ttttttaacctggaacgattagaaactattggcgactcgttcctcaagtttgccatcacg
gcctacctgtactgcacctactcgggcatccatgaaggaaagttgagttatctcaggagt
atgcaggttagtaattacaatctctaccgtctgggtaaacgcaagggactgccgggactg
atgttggccgcgaaattcgagcctctagaaaactggctaccaccctgttacgtcctaaag
agggccgaccctaaaagctatatttggaactggaaagaacaggacgggatttcccagagt
gataaaaatagaaccgatgatgatgatgatggtgtcgatgatgtttgtggtggcgttggc
aaacgtggtgatgataatgatgaagacgaagaggaagaagaggatgatgaggatgaagct
gatttctttttcattaataatgtctccgataaagatgatgatgacgaagatgaagatgcc
tatgatgatgatgatgatgatgatggtggtgatgattttggaggtaagacaacatcagca
gccgctgcagtagcctgcaaaaacgccgccgccaacaacaacaacacgacgacgaccaca
accagcagcaacaacaacaaccttttaatcccatacaacctgcaaacacaacatagccta
ccagacaagagtattgcagactgtatcgaggctctcataggatgctatcttgcgtgctcc
ggtcaaaactctgccctaaaactcatgctctggatggggttaaaggttttgccagtaagc
agtagtaacgaccgcagcggcgaccacagcagcgatcacagcaacgaccacagcggcagc
agcaaagataatttctcgaacaacgccaactttttaacatccccgccatcaccattgtta
cgtcacttcgaaaagtcaataggttacaagttcaaggacaggtcctacctgctgcaagca
ttcacacacgcttcctaccattacaatgaggtaaccgattgctaccaaagattagaattt
ctcggcgacgccatcttggattacgtcatcactaaacatctatttaaagattccatagaa
cattctcccggcatactaacggatctaagatcagccctagtgaacaacaacatcttcgcc
ctgttggctgtcaagtggaatttccacaaattcttaaaatacatcgggccacaactattt
tacgtcatcagcaggttcgtgtcatggttcaatgaacagggagaagatgccatcttggat
gagttggagggcgagtcgcacaacccactagacgcagacaacgacgacgaagcgcaaccg
ccgaccaacaatcgcaacaacaacaaccaaccagcctgcgaactcgaagatatcgaaata
ccgaaagtgctcggcgatatattcgaatctgtggccggtgccatctacctagacgccaat
ctctcgctggatgtcgtctggaaggtatacaagaggctcatggacaagtacatcactgct
ttcctcgaaaaaatcccaaaatccccagttagggaattattggaggctgaaccggaaacg
gctaaatttgaaaaaccggagcgaacaatagacggacgcgtgcgagtgtgcgtcaacgtc
gttggcaagggtagctttagaggcataggaaggaactacagaatcgccaaaacggccgct
gccaaaagagccctgaaatacatcaagatgatcagtggcagcagttgctga
DBGET
integrated database retrieval system