Helobdella robusta: HELRODRAFT_105872
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Entry
HELRODRAFT_105872 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hro
Helobdella robusta
Pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_105872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_105872
Spliceosome [BR:
hro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
HELRODRAFT_105872
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
PRP4
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
20194782
NCBI-ProteinID:
XP_009015232
JGI:
Helro1_105872
UniProt:
T1EDY0
LinkDB
All DBs
Position
Unknown
AA seq
499 aa
AA seq
DB search
MSDDEEMVPRQIRNKIIHYGSLEENIASIRNSAASEAAKISKHEVLETTDFMDSEVRQEQ
LEEYEKRKKARLIHVSTDDSEVKAQLRQLGEPICYFGEGPADRRDRLRELLALRGQNLLK
KKKEELAPKKAKQESEKVTWYHEGKTSLQEARAWIANYSIIRAAERIKIAKEEKLLPTSV
VNTKLQDLFKRNRMTSLIFSQIADSRPISYCSFSPNSALLATASWNGLCKLWSIPECEEL
RVLRGHSTQVGCVSFHPQSTLSISEDCCNLATCAHDGTVKLWSLKGETPMDSIEGHEPNR
VTKAVFHPSGKFLATCCFDSSWRFFDLELKEEILHQEGHCGPVYDISFQCDGSLALTGAT
DSFGRLWDLRTGRCVMFLEGHLKSILTLDFSPNGYQAATGSEDHSVKIWDMRQRGCLYTI
PAHTNIVSRVRFQRNTGLYLVSSSYDKTAKIWNHPNWSPSQALASHEGRVMSCDVSADDK
YIATTTYDKSFKLWSPDYN
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaagaaatggtacctaggcagattaggaataaaattattcattacggt
agtttagaagagaatatcgcctcaatccgaaacagtgcggccagcgaggctgcaaaaatc
agcaaacatgaagtcttggaaacaacagattttatggatagtgaagttaggcaagaacag
ctggaggaatatgagaaacgtaagaaggctcgtcttatacacgtctctactgatgactcg
gaagtgaaagcccagctgagacaattgggagaaccaatttgttatttcggtgaaggcccg
gctgacaggagagatcgattgagggagttgttggcccttaggggacagaatcttctgaag
aaaaagaaagaggagctggcccctaagaaggctaaacaagagtcggaaaaggtaacatgg
taccacgagggtaagacttcattgcaagaggcacgagcctggatagctaactactccata
atcagagcagctgaaaggataaagattgcgaaagaagagaaacttctaccgaccagtgtt
gtcaacactaagctacaagatctattcaaacgtaataggatgacgtcattaatattcagc
caaatagcagactccaggccaatatcttactgctcattctcacctaacagtgcattactg
gctactgcctcgtggaatggactttgcaaactctggtctatacctgaatgtgaagagtta
agggttctcagaggccacagcactcaagtcggctgtgtgtcattccacccacagtcaact
ctatccatatctgaagattgctgcaatctagctacatgtgcacacgatggcactgtgaag
ttatggtctcttaagggtgagacaccgatggacagcatcgaaggccatgaaccaaacagg
gtgaccaaggcagtcttccatccatcgggcaaattcttggctacttgctgttttgatagc
tcctggcgtttttttgaccttgaacttaaagaagaaattctgcatcaagaaggtcattgc
ggtccagtttatgatatatcattccagtgtgatggttcgctagctcttactggtgcaacg
gattcgtttgggaggctgtgggacttgcggactgggaggtgtgtcatgttcctggagggc
catctcaagtccatccttacccttgacttctcgccaaacgggtaccaggcagcaacgggt
agcgaggaccattcagtgaagatctgggatatgaggcagagaggctgcctgtataccata
cccgcccatactaacatcgtgtctagagtcaggtttcaacggaacacaggtctgtattta
gttagctcttcttatgacaagaccgcaaagatctggaaccaccctaattggtcgccctcc
caggccctggcaagtcacgagggcagggtcatgtcatgtgacgtgtcagctgacgacaag
tacattgccaccactacctacgacaaatcgttcaagttgtggtcgcccgactataattag
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