Helobdella robusta: HELRODRAFT_108114
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Entry
HELRODRAFT_108114 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12589
exosome complex component RRP42
Organism
hro
Helobdella robusta
Pathway
hro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELRODRAFT_108114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_108114
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HELRODRAFT_108114
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
HELRODRAFT_108114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
20194958
NCBI-ProteinID:
XP_009029018
JGI:
Helro1_108114
UniProt:
T1EEF6
LinkDB
All DBs
Position
Unknown
AA seq
296 aa
AA seq
DB search
MAELLLSEAERTYIVHGIQQNVRQDGRSREDYRYIELETDFVPHLCGSARVRLSNTDILA
GVKAEIGEPSEGSPKEGYLKFFIDCSANATPDFEGRGGEALAEGISSMLENIYLHKSTLD
YEKLGIIPGKKCWVLYVDVLILEVGGNLIDAISLAVKAALFNSKIPNLTVVTSELNEAEI
ELSDDPYDCFRLDVSRAPCIVTLNKVLDKYIVDASLEEETCISSRIILGVQPDGTVTGLK
KDGQSGINPTHLIEVTKMGVSIGLELNKKLTKALLEEESMAINPNVKLNTNCGFLR
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggccgaattattgttgagcgaggccgagcggacttacattgttcatggaattcaacaa
aatgtgcgccaggatggcaggagcagagaagattacagatacattgaacttgagacagat
tttgttcctcatttgtgtggttcggctagagtaagattgtccaacacggacattcttgca
ggtgtaaaagctgaaataggagaaccatcagaaggctcccctaaggaaggatacctgaaa
ttcttcattgattgttcagcaaatgccactcctgattttgagggcagaggcggtgaggca
ttagcagaaggcatcagttccatgctcgaaaacatttatttacacaaatcaacgctcgac
tatgaaaagttaggcatcattcctggaaaaaagtgctgggtcctttacgtcgacgtcttg
atccttgaagtaggtggcaacttgattgatgccatatctctagctgtcaaagctgctctg
ttcaattccaagattcccaatttgacggttgtgacaagtgaattgaatgaagctgaaata
gaattgtccgatgacccgtatgattgcttcagactcgatgtgtctcgagcgccttgcatt
gttactttaaataaggttttggataaatatattgtagacgcttcccttgaagaagaaaca
tgcatttcatcaagaattatattaggggtacaaccggatggcactgtgaccggcctcaag
aaggatggccaatcaggtatcaatccaacacatctcatcgaagtcacaaagatgggggtg
tccatagggttggagttgaacaaaaagttaacgaaggcccttcttgaagaggaatccatg
gccatcaatccaaacgtcaaactgaacactaactgcggatttttaagatga
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