Helobdella robusta: HELRODRAFT_110038
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Entry
HELRODRAFT_110038 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
hro
Helobdella robusta
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_110038
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HELRODRAFT_110038
Spliceosome [BR:
hro03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
HELRODRAFT_110038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
R3H
HA2_N
DEAD
Ank_2
AAA_19
AAA_22
nSTAND3
Ank
ATPase
Ank_3
Ank_5
T2SSE
AAA_7
FtsK_SpoIIIE
TrwB_AAD_bind
Sigma54_activat
AAA_29
TsaE
SRP54
ABC_tran
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
20195137
NCBI-ProteinID:
XP_009013159
JGI:
Helro1_110038
UniProt:
T1EEY5
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MWGSSESAVQRPNGINNSGQGGGGNQSNKYQGKNVVCVGEELKIAVNLALERFRLSEDMQ
EFDFPSSLKSNERAYVHNLCVKYGFKSRSKGKKSNRILTVMKKDLNSQSCVLTNVDLVRN
SRNQIQNLLQKHPLTVKERQELQQRNERNQMNESMMKEIAKTTTGRLNNGMPQVPPPKST
SPEFLAFQDSLPVSKMKDVIVKTINENKVILISGETGSGKTTQIPQLILNDCHANNKACR
IFCTQPRRLSALTIAERVAAERGEKIGHTVGYQIRLESRVSPKTILTFCTNGVLLRTLMA
GSQTISDVTHILVDEVHERDRFCDFLLTVLKDLLPRMKHLKLVLMSANINTQLFSTYFTG
CPILQLAGRMFDVQELFLEDILKWTNYTNKEMEKRQQSFKFSCNNNSSSSSSSHNNNNNN
DIYPSFDYQNPYLNNNSNNNLNKNNSSNNLYTGTEREELEPWLVKEWDDLLAEIWLNVKE
EIFSQIFHLILNENVNVDHRHSEMSVTPLMVAAGRGFISVVEKLLNMGANVHVRSSNDWR
AIDWAQKFDQAEVVELIEAHIATLENSEDDDANLLKFSDSLTKEDKELLSLYHSSFDDDK
VDVDLIICLLQKIHSLQQPAILVFLPGYDEIMTLRERIVENRCFAENARYILYTLHSQMQ
SSDQKNIFKVPESGTRKIILSTNIAETSITINDVVFVIDSGKVKMKSYDALTSVSMLKTQ
WISKSSVSQRSGRAGRCRPGVAYHLFSSVRYQHMQEYPLPELVCYPLQELCLHTKLLASP
NCKIADFLSKAPEPPAFLITKNAVHLLKQIDALDPFEDLTELGHHLADLPIEPKYGKMIL
YSVVLKCLDPILTIACSLAYKDPFLLPSLPHQKRAAAMSRRRFAAGTCSDHMALLRAFQS
WQKARSEGWEKSFCNKNFLSSSTMEMIVSMRLTQLLGQLRAAGFVRARGGGDIRDLNSNS
ENWSVVKAALCAGMYPNLIKVNKERSHLITNKESKIRFHSSSVLGPAPNEVGSNMHNVAV
SRLPTDWLAFEEMTRMHRTLQVKSCTAISPITVALFAGPAKLPSSQQQQPQQIPADSWHS
DSEQEDIKDDNQPKSYLALDDWIKFSFEPGNSTLIVQLRLKWHSLFMRRMKAPTKLWSPF
DETTIKTIVNVLTNEEHALGLQQPAGIGQRPRPMCSETSVMSGGSKELSSSSSSLSSLPG
AAELSNNQDGSSSAAKNCWYFSNVLH
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgtggggttcttcagagtcagctgtccagcgaccaaatggcattaataatagtggtcag
ggtggtgggggcaatcaatccaacaaatatcagggcaagaatgttgtttgtgtcggtgaa
gaactaaaaattgctgttaatttagctcttgaaagatttagactttctgaagacatgcaa
gaatttgattttccttcatctttgaaatccaatgagagagcctatgtacataatttgtgt
gttaaatatggtttcaaatcaagaagcaaaggcaaaaagtcaaatcgcattctgaccgtg
atgaagaaggatttgaattctcagtcgtgcgttctcacaaatgttgatcttgtaaggaac
tctcgtaatcagattcaaaatttactccaaaaacatccattgactgttaaagaaaggcag
gaacttcaacaaagaaatgagagaaatcaaatgaatgaaagtatgatgaaagagatagca
aagacgacaacaggtagattgaacaatggaatgcctcaagtaccaccacccaaatcaaca
tctccagagtttctggcttttcaagatagcctgcctgtctccaagatgaaggacgttatt
gtgaagaccatcaatgaaaacaaagtcatcctaatctctggcgaaactggttctggcaaa
acaacacaaattcctcaactgatactgaatgattgtcatgcgaacaacaaggcatgtaga
atcttctgcacccagccacgcagattatcagcactgaccattgcagagcgtgtagcagct
gaaaggggtgagaaaattggccatactgttggctaccagatcagattggagagcagagta
tctccaaagacgattctaactttttgtacgaacggtgttctgttgagaacgttgatggca
ggtagtcagaccatatcagacgtcactcatattctcgtggatgaagtacacgagcgagat
aggttctgcgactttctgctgaccgtcttgaaggatttgctacctcgcatgaagcatttg
aagctagtactgatgagtgcaaacatcaacacgcagctcttctcaacgtacttcactgga
tgtcccatcttgcaattagcaggtcgaatgtttgatgtccaggagctcttcctcgaagac
atcctcaaatggacaaattatacaaacaaggagatggagaagaggcagcaatcctttaag
ttttcatgcaacaacaacagcagcagcagtagtagcagccacaacaacaacaacaacaat
gacatctacccttcttttgattaccagaatccatacttaaacaacaacagcaataataat
cttaataaaaataattcttctaacaacttgtacactgggacagaaagggaggagctggag
ccgtggctggtgaaagaatgggatgatctgctggctgagatttggctgaacgtcaaagaa
gagatattctcacaaatatttcatctcatactcaatgaaaatgtcaatgttgaccacagg
cattccgagatgagtgtcaccccgttgatggtggcagcaggtcgaggcttcatcagcgtg
gttgagaagttgttgaacatgggggcgaacgtgcacgtcaggtccagcaatgactggagg
gccatcgactgggcgcagaagtttgaccaggctgaggtcgttgaactcattgaagctcac
atcgctactctggagaacagtgaggatgacgatgcaaaccttctgaaattttctgacagt
ctgacgaaggaggataaggaactgctcagtttgtatcacagcagcttcgatgatgacaag
gttgatgtcgacctcatcatctgcctgctacaaaaaatacattccttgcaacaacctgcc
atccttgtcttcctgcccggttacgatgagataatgacgttgagggagaggatagttgag
aacagatgctttgcagagaatgctcggtacattctgtacaccctgcattcacaaatgcag
tcgtcagatcagaagaacatattcaaggttcctgaaagtgggaccaggaaaataatcttg
tcgacaaacattgccgagacgagcatcaccattaacgatgtcgtctttgttatcgactct
gggaaagtgaagatgaagtcttatgacgctctcacatcagtttccatgcttaagacccag
tggatctcgaagagcagtgtctcacaaagaagtggaagagcaggcaggtgcagaccaggt
gtggcctaccacctattcagcagtgtcaggtaccaacacatgcaggagtacccacttcct
gaactcgtctgctatccactccaggaattatgcctacacacgaaattgttggcctcaccc
aactgcaaaatagcagactttctttccaaggctcccgaacctccagcattcctcatcacg
aagaatgccgttcacttgctcaagcaaatagatgctctggacccatttgaagacctgact
gaactgggccaccatctagctgacctgcccatcgaaccgaagtatggaaagatgattctc
tacagcgtcgttctcaaatgccttgatcccatcctcaccattgcctgctccctcgcttac
aaggatccatttctcctgccgtcactgccccaccagaagagggcagctgccatgtcgagg
aggaggtttgcagcaggaacatgcagtgaccacatggctctgctgagggcgtttcaaagt
tggcagaaagctcgatcagaggggtgggagaaatcgttttgtaacaaaaacttcttgtcc
tcatctacaatggagatgattgtatctatgaggttaactcagctgttgggtcagttgagg
gcagctggtttcgtgagggctcgtggcggaggggacatcagggatctcaactcgaattct
gaaaactggtcggtggtgaaggctgccttgtgtgctggcatgtaccccaatctcatcaag
gtcaacaaggagaggtcacacctcatcaccaacaaggaaagcaagatacgcttccacagt
tcctcagtccttggaccggcacccaatgaagttggttccaacatgcacaatgttgctgtt
agccgtctgcccactgattggctggcctttgaggagatgactcgcatgcatcgtactctg
caggtaaaatcatgcactgccatctctccaataactgtagccctatttgcagggcctgcc
aagttgccctcatcgcagcaacaacagcctcaacaaataccagcagactcatggcatagt
gatagcgagcaagaagacatcaaagatgacaaccaaccaaaaagttacctggctctcgat
gattggatcaagttttcatttgagcctggcaactccacgttgattgttcaactgcgcctc
aagtggcactccctattcatgcgtcgaatgaaggctcccaccaaactctggtctcccttc
gatgagacgacaataaaaaccattgtgaatgtgctgaccaatgaagaacatgcactgggt
ctgcagcaacctgcaggcattggccaacgaccgagacccatgtgcagcgagacgagtgtc
atgagtgggggttccaaggagttgtcctcatcttcatcctcgttgtcgtcattaccggga
gctgctgagttgagcaacaatcaggatggttcaagttctgctgcaaagaattgttggtac
ttttcaaatgttttacattaa
DBGET
integrated database retrieval system
