Helobdella robusta: HELRODRAFT_111117
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Entry
HELRODRAFT_111117 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
hro
Helobdella robusta
Pathway
hro04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
HELRODRAFT_111117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hro04131
]
HELRODRAFT_111117
Membrane trafficking [BR:
hro04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
HELRODRAFT_111117
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
WD40_CDC20-Fz
TPR_VPS8_2
zf_RING_Vps8_fungal
WDR55
zf-RING_Vps41
PHD
WD40
Beta-prop_HPS5
EIF3I
Beta-prop_NWD2_C
Beta-prop_EML
ANAPC4_WD40
DeoRC
WD40_Prp19
DUF7131
Motif
Other DBs
NCBI-GeneID:
20195236
NCBI-ProteinID:
XP_009016266
JGI:
Helro1_111117
UniProt:
T1EF84
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
MTTTQNGERHEHHVNGQSADGKDLLYLDAVEIDDKEFNIPPIKNLPTLESILNTPDDHDE
LNSALLVETRNLLSAVNRISRNADKSNLHGCVLRHVTLKSISSQLLSAADKVDAGLPTAL
AVSKFIAVGTSHGLIMVFDSKQVLRWCLGSTAVGAQYGAVSALSFNIDSTRLLSGFARGQ
IMMWDLTNGKLLRTVLDAHPPGTAILHIKFTDDRTTAITSDSGGSVFQLDFRRKLGIRTC
ESQCLFSGSQGEACTIEPLCTQQSIPEHPMKDVILVAMATLSKAIILVVKPHLMAHFVYP
LVGDPSTLPLLSWQFVVIQVSEHSKSVDPVLAFGRDQVVYFAQVCVGVDNINVSVLQKTD
LPYKLLCMTWINPRTMVFIDTSEKAHLVDVRTEQEVQVVLDLASVQLAYSTSFYKSLATG
GNVSQALAYAGEQACYQSIVTYNNQLVLLGTRGVHIITLRSWSDRINLLVKQRKYKQAVE
LGLTFYKDTAMAVQGLVWNPQKRKTVVMELLVKVVMQYVDDFMSGVGHVDGMYSSQAGLH
AEFYDDCYEVLQVCINYCLETDNNELLFGYLFDRFSENEVTKELYLESLEPEIMDKNLTY
ISPWVMKCFVDHYERKGMMQNVEACILHLDIMSLDIHQIMSLCWMHGLFDTILYIYNKAM
RDFITPLTSLLDRLTTDPAAEEDKQLYDNVTNMGNKILVYISCCLCGRGYLHGELDAEDV
PKVRNQVILAITSLHSQQSNLSESTYPYLRTLINFNARDFFNVLSLAFEGDRFNGKEKQR
VVDILLLLMVEGVGFNSSQIGILFVFLARQISQKGNSIQVKSILFDQVLESLCSPDQDNS
KHEERQQLLLELLNTGVLHSFHGNRDELKLVLMAESAGFYRVVESLHIKKRRFHLAFSCY
LKDLARKMKIFNFVDMVLKDESITKKEKELVWKEAVENLDKLVVIDKLKTAHLVYNVMGK
EGFVTVLNLMNSDSRILFDFLQGVFELTGPSVVKQEVEVGSRKFMKVDGRLYEKYVELAC
EFRKNEEEIIEFLRSHTDYSTDLVLSVVKKNNYKEVTCFLLEESGDYSGAFDLKMNIAQG
ICTGNDAHQIESNIWSIVKYLQRNNKHFSTDLRHKCWHQLLDLVLQKQEDVSLEMYEDDN
RISTEQIKILTSQVMTACMPFLPPGLILQRVLSSPCYSSGRYGDLKSLLNNMMDSCNYER
VLIKTCANLFDRDYHSQLSRMLKTTTMATKLKASRCYLCFKDMTYRSSSSSASAALNDDS
IICFQCGHGYHCRCLSSIGLRRKSVSNDAEGGSDDWICYICCESASKSPSSPGYSINNIH
IPVNGTTDGSNQRDERSTFEDTTDQHDHHQQLNQAQLDALQNLRASQKSRPGLSTLMELK
KYATDKQKTKNVNERTIIWN
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactcaaaatggcgagagacatgaacatcacgtgaacggacaatctgcagac
ggaaaggatttgctgtatttggacgccgttgaaattgatgacaaggagttcaacattccg
cccatcaaaaatctcccaacattagagagcatactgaacaccccggacgatcatgatgag
ctgaacagcgccctgctagtcgaaaccaggaatttgctatccgctgttaatagaataagc
aggaacgcagacaaaagcaacttgcatggatgtgtacttcgacacgtaacattgaaatca
atttcatcacagttactttcagcagcagacaaggtcgatgcaggacttccaactgcactt
gcagtctcaaagttcatagcagttggaacttcacatggtctcatcatggtctttgattcc
aaacaagttcttcgttggtgtctgggaagcacagctgttggtgcgcaatatggggcagtg
tcagctctgagcttcaacatcgacagcaccagattgttgagtgggtttgccagaggacag
attatgatgtgggacctgacaaatggcaagttgttgaggacggttcttgatgcacaccca
ccaggcaccgccatcttgcacatcaaattcactgatgaccgaacaaccgcaatcaccagc
gacagtgggggatcagttttccagttagacttcaggcgcaagttgggaattagaacatgc
gagtctcagtgcctgttttctgggagtcaaggagaggcgtgcaccatcgagccactctgc
acgcaacaatccattccagaacatccaatgaaggacgtcatcctcgttgccatggcaact
ctctccaaagccatcattcttgttgtgaagccccatctgatggcacattttgtgtaccca
cttgtgggggatccatccaccctgccactcttgagttggcagtttgtggtcatccaggta
tcagaacatagcaagtcagttgatcctgtgcttgcattcggtagggaccaggtcgtctac
tttgcccaggtttgtgttggagtagacaacataaatgtgtctgtgctgcagaagactgac
ctgccctacaaactcctctgcatgacctggatcaaccctcgcaccatggtcttcattgac
acttctgagaaagcccatctggtcgatgtaagaaccgaacaggaagttcaggttgtgttg
gacctggccagtgtacaactagcatacagcacgagtttctacaagtccctggcgacgggg
ggcaacgtgagtcaggccctcgcgtatgcaggtgaacaggcgtgctaccaatccatcgtc
acttacaacaaccagctggttctgctgggcacaagaggcgtgcacatcatcaccttgagg
tcctggtccgatcgcatcaacttgctggtgaagcagcgcaagtacaagcaggcggttgag
ttggggttgaccttctacaaagatactgctatggcagtgcagggtctcgtgtggaacccc
cagaagaggaagactgttgtgatggagttgctggtaaaggtggttatgcagtatgtcgat
gatttcatgagtggagttggtcacgttgatggaatgtacagttcgcaagctggtctccat
gctgagttttatgatgattgctacgaggtgcttcaagtttgcatcaactactgtctcgaa
actgacaacaacgaattactgtttggatacctctttgataggttctcggaaaacgaggtg
acgaaggagttatatctggagagtttggagccagaaataatggataagaatttgacatac
atcagtccttgggtcatgaaatgttttgtggatcattatgaaaggaagggaatgatgcag
aatgttgaggcgtgcatcctgcatctcgacatcatgagtctcgatatccatcagatcatg
tctctatgctggatgcacggcttgttcgacaccatcctctacatatacaacaaggccatg
cgtgacttcatcacgcccctgaccagtctcctcgatcgactgaccactgatccagctgct
gaggaggataagcagctgtacgacaacgtgacgaatatgggcaataagattcttgtgtac
atcagttgctgcctttgcggtcgaggctatcttcatggagagcttgatgccgaggatgtt
ccgaaagtgcgcaaccaggtcatccttgccatcacatcacttcacagtcagcagagtaat
ctttctgagtcgacatacccctacctacgcactctcatcaacttcaacgccagggatttc
ttcaacgtcttgtctctggcgtttgagggagacagattcaatggcaaggaaaaacaaaga
gttgtcgatattctgcttctccttatggtcgaaggtgttggcttcaactcttcacagatt
ggcatcttgtttgtgttcctggctcgtcagatcagtcagaaaggaaacagcatccaagtg
aaatccatcttgttcgatcaagtcctcgagtccctctgctctccagaccaagataattct
aagcacgaggagcgtcaacaacttcttctcgaacttcttaacactggagttcttcatagc
ttccacggaaacagagatgaactgaaactcgtcttgatggccgaatcagctggattttac
agagttgtggaatcactgcatataaaaaagaggagatttcatttggccttttcttgctat
ttgaaagatttagcgaggaaaatgaagattttcaattttgttgatatggttttaaaagat
gaatcaattacgaagaaggagaaggaattagtgtggaaggaagcagtggagaacttggat
aagttggtggtgatcgataagttgaagactgctcatctggtatacaacgtgatgggtaag
gagggctttgtcacggttttgaatcttatgaattctgatagtagaatcctctttgacttt
ctacaaggtgtgtttgaattgactggtccgtcagttgtcaaacaagaagttgaggttgga
agtcgcaaattcatgaaggtcgacgggcggctgtacgagaagtatgttgagctggcgtgc
gagtttaggaaaaacgaagaagaaattattgaatttctgcgttcgcacacggactacagt
acagacctggtgctgagtgtcgttaaaaagaataattacaaggaggtcacctgcttcctt
ctcgaagagtctggagattattcgggggcgtttgatttgaaaatgaacatagctcaggga
atctgcacaggcaacgatgctcatcaaattgagagcaacatctggagtattgtgaaatat
ttacagaggaacaacaaacatttctctacagacctaagacacaaatgttggcatcagctg
cttgacctggttcttcaaaagcaggaagatgtctcgctagaaatgtacgaagatgacaac
agaatatcgacagagcaaattaagatattaacatcgcaagtgatgacggcatgcatgccc
ttcctgccacctggactcatccttcaaagggttctttccagtccatgctactcgtccggt
aggtacggagatttgaaaagtctgctcaataacatgatggactcgtgcaattatgaacgg
gtactcataaagacgtgtgccaacctattcgatagagattaccattcacagctctctcga
atgctcaagacgaccaccatggcaactaaactgaaggcatccaggtgctatctctgtttc
aaagacatgacctatcgctcgtcctcttcatcagcatcagcggctctgaatgacgattca
atcatttgcttccaatgtggtcacgggtaccactgccgctgcctgtcatcgatcggtctg
cgaaggaaaagtgtcagtaacgatgctgaaggtggaagtgacgattggatctgttacatt
tgttgtgaaagtgcttcaaagagtccatcgtctccaggctacagtattaacaacatccac
attccggttaatggtacaactgacggaagcaatcagcgagatgaacgttctacatttgaa
gacacgaccgaccaacatgatcaccaccaacaactgaaccaagcacaactggacgcactg
cagaatttgagggcatctcaaaaaagtaggccaggtttgtcgacgttgatggagctgaag
aaatatgcgacagacaaacaaaaaactaaaaatgtaaatgaaagaacaattatatggaac
tga
DBGET
integrated database retrieval system
