Helobdella robusta: HELRODRAFT_112849
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Entry
HELRODRAFT_112849 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03015
mRNA surveillance pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_112849
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_112849
03015 mRNA surveillance pathway
HELRODRAFT_112849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_112849
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_112849
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HELRODRAFT_112849
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HELRODRAFT_112849
Spliceosome [BR:
hro03041
]
Complex C
Other components
EJC/TREX
HELRODRAFT_112849
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HELRODRAFT_112849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
20195378
NCBI-ProteinID:
XP_009020730
JGI:
Helro1_112849
UniProt:
T1EFM6
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MADNDELLDYEEADEQEEIITNGAGDGTIQKKELKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGLDVVCQAKSGMGKTAVFVLATLQQLEIVDKQVSVLVMCH
TRELAFQISKEYERFSKYMNGVKIAVFFGGMAITKDEATLKNNCPHIVVGTPGRILALVR
GKNLDLKHLKHFILDECDKMLDQLDMRRDIQEIFKVTPHEKQVMMFSATLGKDIRPVCKK
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDALEFNQVIIFVKSIQRCV
ALSQLLVEQNFPAIAIHKAMSQDDRLSRYQQFKDFQSRILVATNLFGRGMDIERVNIVFN
YDMPENSDTYLHRVARAGRFGTKGLAVTFVSDETDAKVLNEVQERFEVNITELPDAIDHT
TYSTFSSLFQNYCNS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggccgataacgacgaacttctcgattacgaagaagctgatgagcaggaagaaataatt
acaaatggagccggcgacggaaccattcagaagaaggaactgaagggaacgtacgtgtcc
attcacagttcagggttcagagatttccttttgaagcctgaattattaagagcgatcgtt
gattgtggttttgaacatccatctgaagttcaacatgagtgtataccccaggcaattctt
ggcttggatgttgtatgtcaggcaaaatctggtatgggtaagacagccgtcttcgtgttg
gcaacacttcaacaactagagattgtcgacaaacaagtttccgttttggtgatgtgtcat
acaagagaattagccttccaaataagtaaggaatacgaaagattcagcaagtatatgaat
ggtgtcaagattgctgtcttcttcggtggaatggcaataacaaaagacgaagcgactttg
aagaacaactgtccccacattgttgttggtacccctggaagaattcttgctctggttagg
ggtaagaatttggatctgaagcacttgaagcacttcattcttgatgaatgtgacaagatg
ttggaccaattagatatgagaagagacatccaagaaatcttcaaagtaacacctcacgag
aagcaagtcatgatgttctctgccacactcggaaaggatattaggcctgtctgcaaaaaa
ttcatgcaagatccaatggaagtatacgtggacgatgactccaaattaacattacacggt
ctccaacaacattatgtaaaactgaaggacaatgaaaagaatagaaagttgtttgagtta
ttggatgctcttgaattcaaccaggtgatcatatttgtcaagtccatacagaggtgtgtg
gctctttctcagctgctcgtcgaacaaaactttcctgccattgccatccacaaagcaatg
agtcaagatgacaggttgagtcgttatcagcagttcaaagatttccagagtagaatacta
gttgcaactaatttgtttggcagagggatggatattgaaagggtcaacattgtcttcaac
tatgacatgcctgaaaactctgacacttatcttcacagggttgctcgtgctggcaggttc
ggtacaaagggattggctgtgacttttgtgtcagatgaaactgatgccaaggtgctgaat
gaggtgcaggagaggtttgaagtcaacatcaccgaactacctgatgccattgaccacact
acttacagtacgtttagctcattatttcaaaattattgtaatagctaa
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