Helobdella robusta: HELRODRAFT_112893
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Entry
HELRODRAFT_112893 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
hro
Helobdella robusta
Pathway
hro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELRODRAFT_112893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_112893
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
HELRODRAFT_112893
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
20195382
NCBI-ProteinID:
XP_009020831
JGI:
Helro1_112893
UniProt:
T1EFN0
LinkDB
All DBs
Position
Unknown
AA seq
570 aa
AA seq
DB search
MMDTNDAVLSVEDFSQTVFKAVTESRKHVDSLPVSGSDFECWTSYDEFTHLTNHHGKRIL
NLIQLILSKHNLKTDISSELLDVEERYDLLTDACDQLMDRIGTNLDDASNPKKAASLIVS
SRLSNLCLTSSVPTPSSSSSSSSMLMSSSPVAEKPHNASFNKTSVSNYTLMTSKVVTRSQ
DKFKDKIDNSNSPFLPKITEKPNAMIPLGESLKLEASTEDIDDLNLEYPHPYQYELDLFR
PAQQLLEKVITQVPKGVETTPFTYVDTEEKFDELIEKLKSVTEIAVDLEHHSFRSFQGFT
CLMQLSTRDEDIIVDTLALRHCIHKINCVFTNPNIIKVLHGADMDVVWLQKDFGVYLVGM
FDTGQASRILGLPYFSFAYALQHYCNVKADKQYQLADWRIRPLPAELIKYAREDTHYLLY
MYDCMRNDLLHKSNYTDVLLTSAFANSNNLCKKKYQKPRTTETSHRDMYMALKARSSSTK
HHLNDRQMEALKQLFAWRDKIARLEDESTGFILPNQMMFQLAEHLPREPEGILACCKPLP
TFVKKELADIHRILRNVLELPDSYFVSPIL
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgatggatacgaacgatgcagttttgtctgtggaagatttttcacagacagttttcaaa
gcagtaacagaatcacgaaagcacgtcgacagtttgcccgtcagtggcagtgattttgag
tgctggaccagttacgatgagttcacgcatctgaccaatcaccacggcaagaggatcctg
aacctcatccagcttattctgtcgaagcacaacttgaagaccgatatttcttcagaattg
ctggatgttgaagagagatacgacctcctgacggatgcttgtgatcagctgatggataga
ataggcacaaacctcgatgacgcttccaaccctaagaaggctgcatcactgattgtgtca
tccagactgagcaacttgtgtttgacatcttcggtccccacaccatcatcatcgtcgtcg
tcatcttctatgttgatgtcatcttcaccagtggctgaaaaaccacacaatgcttctttc
aacaaaacatctgtgtcaaattacaccctgatgacgagcaaagttgtcacgaggtctcag
gataaattcaaagacaaaattgacaactcgaacagtcctttcctgccaaaaattactgag
aagccgaatgccatgattccacttggagaaagcttgaaattggaagccagtacagaggat
attgatgatctcaaccttgagtatccacatccatatcaatatgaacttgatctgtttcga
ccagcgcagcaactccttgaaaaagtaatcactcaggttccaaaaggtgtagagacgaca
ccattcacgtacgtcgacacggaggaaaagtttgatgaattaattgaaaagttgaagtca
gtgactgaaatagcagttgatttggagcaccattccttcagaagtttccagggcttcaca
tgtctcatgcagctctcgaccagagatgaagacatcattgtagatacgttggcgttgagg
cactgcatacataagatcaactgcgtttttacaaaccctaatatcattaaggttttgcac
ggtgcagatatggatgtggtctggctgcagaaagacttcggagtgtacctagttggaatg
tttgacactggacaggcctccaggattctcggattgccctacttctcatttgcatatgcc
cttcaacattactgcaatgtcaaggccgataaacaatatcaacttgctgattggaggatc
aggccattaccggctgaattgataaagtacgctagggaggacacgcactacctgctctac
atgtacgactgcatgaggaatgatttgcttcacaagagcaactacactgacgttctcctg
acgagtgcatttgccaacagcaacaacctctgcaagaagaaatatcagaaaccacgtaca
actgaaaccagccatagagatatgtacatggctctgaaggcaaggtcttcatctaccaag
catcacctcaatgaccggcagatggaagcactgaagcagctgtttgcctggagagataaa
attgctcgtctcgaagacgagagtactgggttcatccttccaaaccagatgatgtttcag
ctggctgagcacctgccaagagaacctgaaggaatactggcctgctgcaaacccctgccc
acctttgtgaagaaggaattagctgacattcatagaatcctcagaaatgttcttgagtta
cctgacagctattttgttagtccaattctttga
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