Helobdella robusta: HELRODRAFT_112898
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Entry
HELRODRAFT_112898 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03015
mRNA surveillance pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_112898
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_112898
03015 mRNA surveillance pathway
HELRODRAFT_112898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_112898
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_112898
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HELRODRAFT_112898
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HELRODRAFT_112898
Spliceosome [BR:
hro03041
]
Complex C
Other components
EJC/TREX
HELRODRAFT_112898
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HELRODRAFT_112898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
P-loop_SecA
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
20195383
NCBI-ProteinID:
XP_009020845
JGI:
Helro1_112898
UniProt:
T1EFN1
LinkDB
All DBs
Position
Unknown
AA seq
415 aa
AA seq
DB search
MADNMDDLLDYEENEDVDAVEERNGVSQKKDVKGTYVSIHSSGFRDFLLKPELLRAIVDC
GFEHPSEVQHECIPQAILGLDVVCQAKSGMGKTAVFVLATLQQLEIVDKQVSVLVMCHTR
ELAFQISKEYERFSKYMNGVKIADEATWKKTVPQMLFGTLGRILLLVREKTWNLKHLKHF
ILDECDKMLDQLDMRRDIQEIFKSTPHEKQVMMFSATLGKDIRPVCKKFMQDPMEVYVDD
DSKLTLHGLQQHYVKLKDNEKNRKLFELLDALEFNQVIIFVKSIQRCVALSQLLVEQNFP
AIAIHKAMSQDDRLSRYQQFKDFQSRILVATNLFGRGMDIERVNIVFNYDMPENSDTYLH
RVARAGRFGTKGLAVTFVSDETDAKVLNEVQERFEVNITELPDVIDHTTYIENNH
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaatatggatgatctgcttgattacgaagaaaatgaagatgttgatgcagta
gaagagagaaatggagtctcacagaagaaagatgtcaaaggaacctatgtgtccattcac
agttctggattcagggattttctcctaaaaccagagttattgagagccattgttgactgc
ggatttgaacatccatctgaagttcaacatgagtgtatacctcaggccattcttggcttg
gatgttgtgtgtcaggcaaaatccggcatgggtaagacggccgttttcgtgctggcaaca
cttcaacagctggagatcgttgacaagcaagtttccgttttggtgatgtgtcatacaaga
gaattagccttccaaataagtaaagaatacgaaaggttcagcaagtatatgaatggtgtc
aagattgctgatgaagcaacttggaaaaaaactgtcccccaaatgttgtttggtaccctg
ggaagaattcttcttctggttagggaaaagacttggaatctgaagcatttgaagcacttc
attcttgatgaatgtgacaaaatgttggaccaattagatatgagaagagacattcaagaa
atcttcaaatcaacccctcatgagaagcaagtcatgatgttctctgccacactcggaaag
gatattagacctgtctgcaaaaaattcatgcaagatccaatggaagtatacgtggatgat
gactccaaattaacattacacggtctccaacaacattatgtaaaattgaaggacaatgaa
aagaatagaaagttgtttgagttgttggatgctcttgagttcaaccaggtgatcatattt
gtcaagtccatacagaggtgtgtggctctttctcagctgctcgtcgaacaaaactttcct
gccattgccatccacaaagcaatgagtcaagatgacaggttgagtcgttatcagcagttc
aaagatttccagagtagaatactagttgcaactaatttgtttggcagagggatggatatt
gaaagggtcaacattgtcttcaactatgacatgcctgaaaactctgacacttatcttcac
agggttgctcgtgctggcagattcggtacaaaaggattggctgtgacttttgtgtcagat
gaaactgatgccaaggtgctgaatgaggtgcaggaaaggtttgaagtgaacatcaccgaa
ctacctgatgtcattgaccacactacatacattgagaacaaccattag
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integrated database retrieval system
