Helobdella robusta: HELRODRAFT_113444
Help
Entry
HELRODRAFT_113444 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hro
Helobdella robusta
Pathway
hro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HELRODRAFT_113444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_113444
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HELRODRAFT_113444
U7-dependent histone pre-mRNA processing factors
HELRODRAFT_113444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
20195427
NCBI-ProteinID:
XP_009021832
JGI:
Helro1_113444
UniProt:
T1EFS5
LinkDB
All DBs
Position
Unknown
AA seq
772 aa
AA seq
DB search
MTSIIKMTAFSGADDDGPPCYMLQVDEFKFLLDCGWDASFKMAPIENLKRHIPQIDAVLI
SHPDTLHLGALPYLVGKLGLKCPMYSTVPVNKMGQLFMYDLYLSHDINEDFDLFSLDDID
VAFERITQLKYNQSCYLKSSSGSGLQITPLPAGYMIGGTIWKIVKDGEEAIVYGVDYNHK
KERHLNGCSFEHAVRPHLFITDTYNAYYSQTKRVTRDEELYNTLIKTLRNDGNVLVCIDT
AGRVLEVSHLLDQLWKNQDSGLTAYSLVMLNRVAYNVIDFAKSQVEWMSEKIMKAFESQR
TNPFQFKFLQICHTLQELAKIPEPKVVLASPCDLEYGFTRDLFVQWCGNPNNCIILTNRS
TPGSLARTLYENPNPKTISLEIKRKVKLEGRELDEMKENKSLNDDDDYTYDDVKLEELDA
SYDSDSGEEEERVETLWHKNKFDLHVRHEKILNIRHFKKAQYVYPFREEKMKFDAYGTFV
DPKLFAFADGQNAMNNAKVLKGRKNTEIKGCLYTADVHKCIRSTETLEIQSKIVFIDFEG
RSDGESIKSIISKVKPRQLILVRGNKKNTTRLVDEWQSHVMQGGRVLIPRTNEVLDATTD
RHIYQVKLKDSVVSALKFSHVKDVEITWLDAQLDMTKYQSDTTTTSINIKKEKRRDDSDN
RDMDVDDGSNDPMDVDDDGRDVDDDVMPALVPLAPNLVEKHSAIFINIPRLSDFKQYVIS
QGVQAEMSGGVLICNNKVAVKKNELGMILLEGTVCDDYYKVRQCLYEQFIIL
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgatcataaaaatgacggcattctccggtgctgacgatgatgggccaccctgc
tacatgctccaagttgacgagttcaaatttcttctcgactgcggatgggacgccagtttc
aaaatggcacccattgaaaatctcaaaaggcatataccacaaatcgatgcagtcctaata
tctcatccagacactctgcaccttggggctttgccatatttagtgggtaaacttggcctg
aagtgtcccatgtattcgacggtgcctgttaataagatggggcagttgttcatgtatgat
ctttatttgtcgcacgacatcaacgaagatttcgacttgttctcattggacgacatagat
gtagcattcgagagaatcacccaactgaaatataaccagtcctgctatctcaaaagttca
tctggttccggcctacagatcacgcccctcccagcagggtacatgatcggtggaacgata
tggaagatagtgaaagatggagaggaggccatcgtctacggggtcgattacaatcataaa
aaagaaaggcatttgaatggctgttcatttgagcacgcggttagaccacatctgttcatc
accgatacgtacaatgcttactactcacagactaaaagagtgaccagggacgaagagttg
tacaatacattgataaagactcttcgaaacgatggaaatgttcttgtgtgcatcgataca
gctggtagagttttggaggtctctcacttacttgatcaactatggaagaaccaggattca
ggtctaacggcctacagtctagtgatgcttaacagagtggcatacaatgtcatcgacttt
gcaaaatcccaagtggaatggatgagtgagaagataatgaaggcgttcgaatctcagagg
accaacccgttccagttcaaattcctacaaatatgccacaccctacaagagcttgccaag
atcccagagcctaaagtcgtcctagccagcccttgtgaccttgagtacggatttaccagg
gacttgttcgtccagtggtgtgggaacccgaacaattgtatcatacttactaatcggtcg
acaccaggaagtttggctaggactttgtacgagaatcctaacccaaagactatatctctt
gagattaaacgaaaagtgaagctagaaggaagggagctggatgaaatgaaggagaataaa
tcactaaatgatgatgacgattacacatacgacgacgtcaagttagaagaactggatgcg
agttatgatagtgattcaggggaggaggaggagagggttgagactctctggcacaaaaat
aagtttgatctacacgtaagacacgagaaaattttaaacatacggcacttcaagaaagcc
cagtatgtctacccgttcagggaggagaagatgaagtttgacgcgtatgggaccttcgtc
gatccgaagctctttgcatttgcagacggccaaaatgcgatgaataatgcgaaagtattg
aagggtaggaagaacactgaaataaaaggttgtctgtacacggcagacgtacacaagtgc
atacgttcaaccgagacactggagatccaatcaaaaatcgtcttcatcgacttcgaaggc
cggtccgatggcgagtctattaaaagcatcatctcgaaagttaaacctaggcagctgatc
ttagtgagagggaacaaaaagaacaccacccgtctggtcgatgaatggcagagtcacgtg
atgcagggggggcgtgtcctaatcccgcggaccaatgaggtgttagatgctaccacggac
aggcacatatatcaggtaaaactaaaagattcagtggtcagtgcgttaaagttttcacac
gtgaaggatgtggaaattacatggctggatgcacagctcgatatgaccaagtatcaatcc
gataccacaacaacatcgataaacatcaaaaaagagaagcgtcgtgacgacagtgacaat
cgtgacatggacgttgacgatggtagtaatgatccgatggatgttgatgatgatggtcgt
gacgtcgacgatgacgtcatgcctgcgttagttccgctagctcccaatttggtggagaag
cattcggcgatcttcataaacattccacgtctgtctgacttcaagcagtatgtcatcagt
cagggcgtgcaagcagagatgagtggaggtgtgctcatttgtaataacaaagttgccgtc
aagaagaacgagctaggaatgattcttctggaaggaacagtttgtgacgactactacaaa
gttcgacagtgcctctacgaacagttcataatactataa
DBGET
integrated database retrieval system
