Helobdella robusta: HELRODRAFT_116445
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Entry
HELRODRAFT_116445 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
hro
Helobdella robusta
Pathway
hro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELRODRAFT_116445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_116445
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HELRODRAFT_116445
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
HELRODRAFT_116445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
ECR1_N_2
S1
Motif
Other DBs
NCBI-GeneID:
20195653
NCBI-ProteinID:
XP_009030954
JGI:
Helro1_116445
UniProt:
T1EGF1
LinkDB
All DBs
Position
Unknown
AA seq
305 aa
AA seq
DB search
MAAPSISVSLACLRHSKKAKRVESDNRKFVIPGDIITKQLEEKYIISHGTYLDERADENY
LRSSVAGVVEYVSKLVTVNPLKTRYNGEVGDVIIGRVVEVSQKRWKVDIKAKLDAFLPLS
CVNLPAGEIRRKSEEDEKWMREYMKEGDVITAEVRSVYSDGVLSLNTKNLKHGKLGQGLL
LSVSPSLIKHRKAHFHTLICNVGVILGSNGYIWVYPLGQGKQEESGGHVQNFEPFSKEDH
ELVSRVRNSILLLSEHDIMLYDNTIIVAYEASMQYQVKDLLKPDISREVADIVRHHLQQH
HFMDE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccctcgatatcagtgagtttagcgtgtttgaggcactcaaagaaagcgaaa
cgagttgaaagtgataaccggaagtttgtcattcctggggacattattacgaaacagttg
gaagaaaaatatatcataagccacggtacatacctggacgagagggccgatgaaaattat
ttgaggtcatcggtggctggggtcgtcgagtacgtcagcaaacttgtgactgtcaaccca
ctgaaaacaagatacaatggagaagttggcgacgtcataataggccgggtcgttgaggtc
agccagaaaaggtggaaagtcgatatcaaggccaagttagatgcttttctgccgctgtca
tgtgtcaatcttccagctggagagattcgcagaaaatctgaagaagatgaaaaatggatg
agagaatatatgaaggagggtgatgttatcaccgcggaagtcagatcagtatatagtgat
ggggtcttatcactcaacacaaaaaatcttaaacacggaaagctgggtcagggcctcctt
ctcagtgtctcgccctctctcatcaagcaccgcaaggcccacttccacaccctcatctgc
aacgtgggggtcatactcggtagcaatgggtacatctgggtctaccccttagggcagggt
aagcaagaggagtcaggaggtcatgtccaaaattttgagccattttcaaaagaggatcac
gagctagtatcaagggttagaaacagtatcctgctactatctgagcatgatatcatgctg
tatgataacactatcatcgtggcctatgaagcttctatgcaatatcaggtaaaagacctc
ctaaagcccgatatatcgagagaggttgctgacattgttcgacatcatctccaacaacat
catttcatggatgaatga
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integrated database retrieval system
