KEGG   Helobdella robusta: HELRODRAFT_166240
Entry
HELRODRAFT_166240 CDS       T03272                                 
Name
(RefSeq) hypothetical protein
  KO
K12876  RNA-binding protein 8A
Organism
hro  Helobdella robusta
Pathway
hro03013  Nucleocytoplasmic transport
hro03015  mRNA surveillance pathway
hro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HELRODRAFT_166240
  09122 Translation
   03013 Nucleocytoplasmic transport
    HELRODRAFT_166240
   03015 mRNA surveillance pathway
    HELRODRAFT_166240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hro03019]
    HELRODRAFT_166240
   03041 Spliceosome [BR:hro03041]
    HELRODRAFT_166240
Messenger RNA biogenesis [BR:hro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     HELRODRAFT_166240
Spliceosome [BR:hro03041]
 Complex C
  Other components
   EJC/TREX
    HELRODRAFT_166240
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 20201427
NCBI-ProteinID: XP_009031465
JGI: Helro1_166240
UniProt: T1EXX7
LinkDB
Position
Unknown
AA seq 230 aa
MSSNNSINNSCADSVDDREMLMSVDVEAKDATKSCSIVIDAYEKEFVDVDGEAEADEGVQ
KLKEGAKKKRGRGLETKRYVNEYEYESMDVGVEEMNMENGPQRCQSVEGWIVFVKGINEE
TQEDDIREKFEEFGEIKNLHLNLDRRTGFLKGYALIEYSTYKEAEAAIQSLNGTELCGQK
ISVDWTFVKQPNKKSSKSRKEQRQNPPPHHRHPFSGCRWSSPNGRQTYRK
NT seq 693 nt   +upstreamnt  +downstreamnt
atgtccagcaacaatagcattaataatagctgcgcggactcagttgacgacagagaaatg
ttgatgtcggttgacgtggaagcgaaggacgccacgaagtcgtgctccatcgtcatcgat
gcctatgagaaggagtttgttgatgtcgatggtgaagctgaagcagacgaaggtgttcaa
aagttgaaagagggagctaaaaagaagagaggaagaggtttagagaccaaacgatatgtc
aatgagtatgaatatgaatccatggatgttggagttgaagagatgaacatggagaatggt
cctcagagatgtcaatctgttgaaggatggattgtgtttgtaaaaggcataaatgaagag
acacaagaagatgacattcgtgaaaagtttgaagagtttggtgaaataaagaacttgcat
ctaaacctcgatcgtcgaactggtttcttgaaggggtatgcactcattgagtacagcaca
tacaaggaggctgaggctgccatacagtctttgaatggcacagagttatgtggtcagaag
atcagtgttgattggacttttgtcaagcaaccaaataagaaaagcagtaaaagtcgcaaa
gaacagaggcaaaaccctccaccacatcacaggcatccattttcaggttgtagatggtca
tccccaaatggcagacaaacatatcgcaaatga

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