Helobdella robusta: HELRODRAFT_174494
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Entry
HELRODRAFT_174494 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hro
Helobdella robusta
Pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_174494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_174494
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HELRODRAFT_174494
Spliceosome [BR:
hro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
HELRODRAFT_174494
Complex C
U4/U6.U5 tri-SnRNP related factors
HELRODRAFT_174494
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
HA2_N
OB_NTP_bind
PWI
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
20205017
NCBI-ProteinID:
XP_009020190
JGI:
Helro1_174494
UniProt:
T1F868
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MSVCSWVSDELYTVLGFSDQLISEFLISLAEKSTSPNDFIDKIKNAEVVEVNEVVTKFAN
ELWSKVPHKTVQIKPAREKEARAIKLQQKNKSYQLIPYDEDLGEINVPVKKSENEIKKSE
KRKHLREKAFDDVDDDHFQEQDKTLKKMKYSDNSSDESVKDMKERDEFTERLKNRDKEKT
RQVISKSEKKAKEEAEKRLKLETENRKVIIPDLRKISRREYLKKRHADKIEDLEMEIRDE
EYFFGGIEMTKKEKLEVDYKKNILKLVKDHKKASEVEKVGRYYMPDGTEDIKGKYVEDPN
EKGLNFEHKRWEEEHLNAALISFGAKDAKDKYKKNYDYILDDEIEFVKALQIPGTENCDK
KKLSAVDIKRMTIKECKKKIQRTNLGNVVLMLKSLGIHDLLHFEFMDPPPHESLILALEQ
LYALGALNRHGELTKTGRKMAEFPVDPMVSKMILASEKFKCTEEILTITAMLSVSSSIFY
RPKDKRIHADTARQSFYCKPQAVGDHLTLLNIYNRWEETGFSTQWCFENFVQHRSLKRAR
DVRDQLMGLIERVEIEPTSSEDNIAIRKAITAGFFYNTARLDKSEFMRQVIAIENAWLLE
IAPHYYKEKNLVDGLQKKMPKQMGKSKDELRKGCH
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctgcagttgggtttcagatgaactttatacggttttgggattttccgatcag
ctcatttcggaatttcttataagtttagccgagaaatctacttcaccaaacgatttcatt
gacaagatcaagaatgcagaagtagttgaagttaacgaagtcgtcactaaatttgcgaac
gaactctggtctaaggtaccccataaaacagtacaaattaagccagccagagaaaaagaa
gcaagagctataaaattacagcaaaaaaataaaagctatcagttaattccatacgatgaa
gatttaggtgagataaatgttccggttaaaaaaagcgaaaatgagattaaaaaaagtgaa
aaacgcaagcatctcagagaaaaagcatttgatgatgtggatgatgatcattttcaagaa
caagataaaactttaaaaaaaatgaaatattcagacaatagtagtgatgaaagtgttaaa
gacatgaaagaacgagatgaatttactgagagattaaaaaatcgagacaaagaaaaaact
agacaagtaatttcaaaatcagaaaaaaaggcgaaagaagaggctgaaaaaagattaaag
ctagagactgagaacagaaaagtaataattcctgatttaagaaaaatatcaagaagggaa
tacctaaaaaaaaggcatgctgacaagatagaagatttagagatggaaataagagatgag
gaatatttttttggaggtattgaaatgactaaaaaagaaaaattagaagttgattacaaa
aaaaatattttgaaattagtgaaagatcataaaaaagcttcagaagtagaaaaggttgga
aggtactacatgcctgatggaactgaagatattaaagggaaatatgttgaagatccaaat
gaaaaaggacttaattttgaacacaaacgctgggaagaagaacatttaaatgcagcttta
atttcatttggagccaaagatgccaaagataaatataaaaaaaattatgactacatattg
gatgatgaaattgaatttgtaaaagctttgcaaatacctggtacagaaaattgtgacaaa
aaaaagttatctgctgttgatattaaacgaatgacaattaaagagtgtaaaaaaaaaatt
caaagaacaaatttaggcaatgttgttttgatgctgaagagtttaggcattcatgatctt
ctacattttgagtttatggaccctcctcctcacgagtctcttatacttgcactggagcag
ttatatgcattgggtgcattgaatcgccatggtgaactcacaaaaacgggcagaaaaatg
gcagagtttccagttgatccaatggtttccaaaatgatattggcttctgagaaatttaag
tgtacagaagaaatattaacaattacagctatgttgtctgtcagcagttctatattttac
agacctaaggacaaacgtattcatgctgatacagctcgacaaagtttttattgcaaacct
caagctgtgggtgaccacctgacactactaaatatttataacagatgggaagaaactgga
ttcagcactcagtggtgctttgaaaactttgtacaacacaggtcattaaagagagccaga
gatgtccgtgatcaattgatgggtctcattgaaagagtagaaatagaacctacaagttct
gaagataacattgcaatccgaaaggcaataacggcaggatttttttataatactgccaga
ttggataaaagtgagtttatgaggcaggtcattgccattgaaaacgcatggctgcttgaa
attgcgccgcattattataaagaaaaaaatcttgttgacggattgcaaaaaaaaatgcca
aagcagatgggcaaatcgaaagatgagttacggaaaggatgtcactag
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