Helobdella robusta: HELRODRAFT_175328
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Entry
HELRODRAFT_175328 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
hro
Helobdella robusta
Pathway
hro03015
mRNA surveillance pathway
hro03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HELRODRAFT_175328
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
HELRODRAFT_175328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_175328
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
HELRODRAFT_175328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
20205351
NCBI-ProteinID:
XP_009021006
JGI:
Helro1_175328
UniProt:
T1F952
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MCVCVCVFLCVHVHDDDDLYNDMFLSSHKNHDLDEKPIMKEQKKEIFSVYIGDFTWWTTD
QDLLDTVVGVGVSDVIDIRIHDNPSNGLSKGYATIQVESKISKHLMMTKLLNTKVHGVYI
SVHDHTEEVRKKFEDVFESRIAKKVPSSSNNDTPAQSIPATLSVNRDVPSKPGNTIPVVA
SLQAPMILNSHSNISAPPTVIMPPPPILNVPPPPFMGPTTPSFILLPNINPRQQHMVPQQ
CPPAVRFVRPPPPFIAGPPPNVHLPPPIIINQPPTLPIVDQSHVAMVQKRQQEQKPFEPN
INVELETLPDALALSKAGGKMMTKAEFEKVFSLNRSVAEQSILRASIDAEAGNFRDAIET
LMTAISIVKESKLGSDPQGIALMQPMKDMLARVENDSLKQQLLEKASKSPTNCSRYRRRS
EEADEISCDRERKLDSHIYKQEKKYLDEYEIYLERELKRKKSSRSPLSSHHHDKRRYSPG
KRSPPAGYRRSRNKSRSPRLRSPRPRSPKPSYASSRTRDRMDSRKESAGKDFYEDIRGWD
RDSGRRSPREERRPYRY
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgtgtgtgtgtgtgtgtttctgtgtgtgcatgtgcatgatgatgacgacctgtat
aatgatatgttcctatcctctcataagaaccacgatcttgatgaaaagccgattatgaaa
gagcagaagaaagaaattttttctgtctatattggagattttacatggtggacaaccgat
caggacttgttggatacggtggtcggtgttggagtttctgacgtcatcgacattcgaatt
cacgacaatcctagcaatggcctctcaaaaggatacgcaacgatacaagttgaatcgaag
atcagtaagcacttaatgatgaccaagctgttgaacacgaaagtgcacggtgtgtacatc
tcagttcatgaccacaccgaggaagttaggaagaaatttgaggatgtctttgagagtagg
atcgctaagaaagtccccagctcgtcaaacaacgacacgccagcccagtccataccagcc
actcttagtgtaaatagggatgtgcctagcaagcccggcaacacaattccagttgtggct
tcgttacaggccccgatgattttgaacagccacagcaacatcagtgcacctcctaccgtc
atcatgcctcctcctccgattctcaatgtaccgccgcctccgttcatgggaccaactacc
ccctcattcattctcttaccaaacatcaatccgagacagcagcacatggttcctcaacag
tgccctccagctgtcaggttcgtccggccccctccacctttcattgcgggacctcctcca
aatgtccatctccctccaccaatcataatcaaccagccacccacgttgcccattgttgac
caatcacacgtcgccatggttcagaagcgtcagcaagagcaaaagccatttgagccgaat
attaacgtagagttggaaaccttgccagatgctttggccctttcaaaggctggtggtaag
atgatgacgaaagcagagtttgaaaaagtcttcagcttgaacagatccgtagccgagcaa
tccatattgagggcctctattgacgccgaagctggcaatttcagagatgcgatcgagaca
ttaatgactgccatatccattgtcaaggagagcaaactgggcagtgaccctcaaggcatt
gcactgatgcagccgatgaaagatatgttggctcgcgtcgagaatgactcgctcaaacaa
cagcttctcgaaaaggccagcaaatctcctacaaattgctcacgctacagacgacgctcg
gaagaagccgacgaaatcagttgcgacagagagcgcaaactagacagccacatctacaaa
caagagaaaaagtacctagacgagtacgagatctacctagagagagaattaaaacggaag
aaatccagtagatcgccgctatcttcgcaccaccacgacaaacgtagatactcacctgga
aagagaagcccccccgctggttacagacgatccaggaacaaatcccgaagtcccagactc
cgcagtcctaggccccgcagtccgaagccttcctacgccagcagtcgaaccagagaccgg
atggattcgaggaaggagtcagccggcaaggatttttacgaggatattcgcggatgggat
agggatagtggaagaaggtcgcccagggaggagcgcaggccctaccgttattga
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