Helobdella robusta: HELRODRAFT_178681
Help
Entry
HELRODRAFT_178681 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03015
mRNA surveillance pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_178681
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_178681
03015 mRNA surveillance pathway
HELRODRAFT_178681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_178681
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_178681
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HELRODRAFT_178681
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HELRODRAFT_178681
Spliceosome [BR:
hro03041
]
Complex C
Other components
EJC/TREX
HELRODRAFT_178681
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HELRODRAFT_178681
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Utp25_C
Cas3-like_C_2
SWI2_SNF2
KH_2
DUF7464
Motif
Other DBs
NCBI-GeneID:
20206902
NCBI-ProteinID:
XP_009025018
JGI:
Helro1_178681
UniProt:
T1FDK3
LinkDB
All DBs
Position
Unknown
AA seq
316 aa
AA seq
DB search
MSEELCDFDDSDQIEIVQNIKDQENVSIHRSGFRDFLLKPELLRAINDFGFEFPSEIQND
CIPQAILGLDIICQTKSGMGKTAVFLLSTLQQIELNGENVKILVICHTRELAFQISKEFE
RFSKHMNGVRTAVFFGGRSISKDEETLIKKRPHIVVGTPGRLLALRNKKLTEMLEKLDYN
QVIIFVKSVQRCVSLCEQLNKQKYSVVAIHRSMKQDQRLKIYQQFKNFESRIMVPTNLFG
RGIDIERVNVVINYDVPEDSDTYLHRVARAGRFDTKGLAVTFLANEYDAETLNQVQERFE
VNIDKMPDDIDNAVYF
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagagttgtgtgattttgatgactcagatcaaatagaaatcgttcagaacata
aaagatcaagaaaatgtctcgatccacagatcaggatttagagacttcttattgaaacca
gaattacttcgagctatcaatgatttcggttttgaatttccctcagaaattcagaatgac
tgcatacctcaagccattctcggccttgacatcatctgccagacaaaatcagggatgggc
aaaacagctgtatttcttctgtctaccttgcaacaaattgaattgaacggcgaaaatgta
aaaatcctggtcatttgtcacaccagagaactggcctttcaaataagtaaagaatttgaa
aggttcagcaagcacatgaacggcgttaggacggccgtattttttggaggccgttcaata
tcgaaagacgaggaaacgttaataaagaaacgccctcacatcgtcgtcggtacaccgggc
agattattggccctgagaaacaaaaaattgactgaaatgttagaaaaactggattacaac
caagtcatcatctttgtcaagtctgtgcagagatgcgtgtcactctgcgagcaactcaac
aaacagaaatattcagtagtggcaatacatcgatcgatgaaacaagaccaacggttgaaa
atataccagcagtttaaaaactttgaaagccggataatggtgccaacgaacttgttcggt
agaggaatagatatcgaacgagtgaacgttgtaatcaactacgacgttccagaagactct
gacacctaccttcacagagtggctcgcgcaggaaggttcgacacgaaaggattggcagtc
accttcctagcaaatgaatatgatgccgaaacgttgaatcaagttcaagaaagatttgaa
gtcaacatagacaagatgcctgatgacattgacaatgctgtatatttttag
DBGET
integrated database retrieval system
