Helobdella robusta: HELRODRAFT_179365
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Entry
HELRODRAFT_179365 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hro
Helobdella robusta
Pathway
hro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HELRODRAFT_179365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hro03021
]
HELRODRAFT_179365
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_179365
Transcription machinery [BR:
hro03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HELRODRAFT_179365
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
HELRODRAFT_179365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF7573
Motif
Other DBs
NCBI-GeneID:
20207268
NCBI-ProteinID:
XP_009026445
JGI:
Helro1_179365
UniProt:
T1FEL9
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MESLKGIVTASSSDSALSQSTSATLNHGRPASRLSGPPLKIPKPMPTSSETAPIAKDKMK
EEVAPTKPEKDSNVILETQELQVTIKLEKKKKKKLKNKNLPASETSSATQLSNHLIPADK
NFDMNPVVTTAHLQTAQAAPPVKTKKRKSSDKVSKLDPRTKKKMTEASPLKKNKRPLKDK
DNDDFMDMSPEKKLALARQINSNLFEKLNKGDDVNKVSASATVICAGESLKVADGSNNNC
ADGGDEVSTKDETPKMSEDLRKLFGTEDKDLRLRPPPQPPMMLLSPTIPCTQASGWADFK
ASHPTDFPQVKSSPLANSLSQNNRQFFTNNRDPRKNLLNRKKALLPTPDVLESNSNDSQP
GTIMPLESFELLNVMKRDIAMEAERLRKISCDTSNSTPVVSASPALSSVAPVPDRGQPGF
KKGSSFMNDPANFAAPSSWRRGSPDTMMTNNKNIINSDNINNNNNVNINKPVSGNAFKSF
TRTLLPAPPKLNPLNRYNRPFENEDAFSYNADGCLQQNKYSDREILDYNHFGPQREPHYV
EQQPQHVDRQPQQRQMKPQLKVQPVPQQKTLQQHHQVFDHHHKHHLLAGEYSKAEDERNQ
QQPQQQQKHQQTQLTTTLTSKPLLPAPLLNLLNIPPNRHSPPSTLYSNPADLPTPSSAVR
NSNSPNQSNFARNTNSPIIQSSLTKQPTANESSSIDVQSLLSKLLASGIIGTSRPTQNSI
DDTSNNNNDNNSNNNNNNIIISNTTTTNNNNNDDDDGGDDGNDSTKKKTANTTVPSVFPA
IKKTQTVVADDVDKVEPTPDLTDFKIESLKGKYKEVVSSLYTGLQCSSCAIRFPTTSSST
SSSAQLSTAEAKKRYNSHLDWHFNMNKIEKTGSKSLKYRSWYPDLMEWIQLNDNNIVTSD
YKPTDTNTNNSTAATTSLTNAPSSEASKPQESKSLSVVIGATASDSAAAANADCITSPVV
SDDHPANNKCFVCHETFDRVWNDDREAWCLKEALTKHDKLFHPLCLIDFKEDALTGERAP
NLIDHQQSTDESIVNDNENNCDNNNDDDDDDDNKDNDINMDDDKLESNDDVDNDRGAINI
KSEAAIKVECHKDDEKNDLYTTNNNNDDDDDGAGEGNIDNDDRELKSEFLVKQEGDNLAG
DGDDIATAAAADDDNNNDDDENRSHHDEDEPMDHDETATMTM
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttgaagggaattgttactgcctcttcatcagactctgcactgagccagtca
acgtctgcaactttaaaccatggaagacctgcttcaagattgtccggaccacctctcaaa
atacccaaacccatgccaacctcttctgaaactgcacccattgccaaggacaagatgaag
gaggaggtagcccctacaaagcctgaaaaagattccaatgtgattctggagactcaggaa
ctgcaagtcactatcaagctggagaagaagaaaaagaagaaacttaaaaataagaacctc
cctgcctctgaaacgtctagcgctacacaactttccaatcatctgattccagctgacaaa
aactttgatatgaatccagttgttactactgcacacctgcagacagctcaggctgcaccg
cctgtaaaaacaaaaaaacgtaaatcttctgataaggtgtcaaaattagatccccgaacc
aaaaagaaaatgactgaggccagtccgctgaaaaagaacaaacgccctttaaaagacaag
gacaatgatgactttatggacatgtcacctgaaaaaaaattggccctagccagacaaatt
aattctaatctttttgaaaaacttaataagggtgatgacgttaataaggtttcagcatct
gcaacagttatttgtgcaggtgagagtttaaaggtggcagatgggagtaacaacaattgt
gccgatggtggtgatgaagtaagtacgaaggatgaaactccaaagatgtctgaagatctt
aggaaactgttcggcacagaagataaggacctgcgcttacgacctccaccccagccgccc
atgatgcttctgtctcctacaattccctgcacccaagcatcgggttgggcagacttcaag
gccagtcaccccactgattttcctcaggtcaagtcctcacccctagctaatagtctctcg
caaaataatcgacagttcttcacaaacaaccgcgacccgaggaaaaatttactaaacagg
aagaaggcccttctacctaccccggatgtcctggaaagcaacagcaacgacagccaacct
ggcaccatcatgccactcgaaagttttgaactgttgaacgtcatgaagagggacattgcc
atggaagcagagaggttgagaaagatttcttgtgacactagcaacagcacccctgttgtt
tccgcttcacctgctctctcttccgtggctcctgttcctgacagggggcagccaggattc
aaaaaagggagcagtttcatgaatgatcctgccaactttgccgctccatcttcatggagg
agaggctctccagataccatgatgaccaacaacaaaaacatcatcaacagcgacaacatc
aacaacaataacaacgtcaacatcaacaaaccagtctcgggtaacgcattcaagtccttt
acaagaacattacttccagctcctccgaagctcaacccactcaaccgatacaacagacct
ttcgagaacgaagatgcgttctcgtacaacgctgatggctgtttacagcaaaataaatat
tctgatagggaaatcctcgactacaatcactttgggcctcaacgtgagccacattacgtt
gagcagcagccgcaacatgttgacagacagccacaacaacgacagatgaaacctcagctc
aaggttcagccagtgcctcaacagaaaactctgcaacagcatcatcaagtgtttgatcat
caccacaagcaccacctcttagctggtgagtatagcaaagcagaagatgaaaggaatcaa
cagcagccacagcagcagcagaagcatcaacaaacgcagctaactaccactctaacttcc
aaacctctactgccagcaccgttgttaaacctcttgaacattcctccaaacagacattct
ccgccatcaacattatactcaaatccagctgacctgcccacaccatcatctgctgttcga
aattcaaattctcctaaccaatcaaattttgcgagaaatacaaactctccaatcatccaa
tcatctttaaccaagcaaccgactgccaacgaatcgtcctccattgatgtccaatctttg
ctttctaagctgttagctagtggcattattggaacatcgagacctacacagaattcaatt
gacgacaccagtaacaacaataatgacaacaacagtaataataataataataacatcatc
atcagtaatactactactactaataataataataatgatgatgatgatggtggtgatgat
ggtaatgacagcacgaaaaagaagactgctaatacgacggtaccatcagttttccccgcc
attaagaagactcaaacggtggtggcagatgatgttgataaggtagaaccaactccagac
cttacagatttcaagatcgagtctttgaaagggaagtacaaagaggtggtcagttcctta
tacactggactgcagtgttcttcttgtgcaattagattccccacgacgtcctcatctacg
tcatcgtcagcacagttatcaactgcagaagctaagaaaaggtataattctcaccttgat
tggcacttcaacatgaacaagatagagaagacgggctccaaatctctcaagtataggtcc
tggtatcctgatttaatggaatggatccagttgaacgacaacaacatcgtcacaagtgac
tataaaccaacagacacaaacacaaacaacagcacagcggcgacaacatcattaacaaat
gcaccatcatctgaagcatctaagccacaagagtccaaatcattatctgtggttatcggt
gccactgcttccgactctgcagcagctgcaaacgccgactgcatcacgagccctgtcgta
tccgatgaccacccagctaacaataaatgttttgtctgccacgagacattcgatcgggtc
tggaacgacgacagagaggcatggtgcctgaaggaggccctcaccaaacacgacaaactc
ttccatcctctctgcctgatagacttcaaagaggacgcactgacgggtgaacgcgctcct
aatctcatcgaccatcagcaatcaactgacgaatcgatcgtcaacgataacgaaaacaat
tgtgataataataatgatgatgatgatgatgatgataacaaagataacgacatcaatatg
gatgatgataagttagagagcaatgatgatgttgacaatgatagaggtgctataaatatt
aaaagtgaagctgctataaaagttgaatgccacaaagatgatgagaagaatgatctctac
accactaacaacaacaacgacgacgacgatgatggtgctggtgagggtaacatcgataat
gatgaccgcgaattgaaatcagagtttctagtaaaacaggaaggagataatttagctgga
gatggcgatgatattgctactgctgcagctgctgatgatgacaataataatgatgatgat
gagaaccgcagtcaccatgatgaggacgaacctatggaccatgatgaaacagcaacgatg
acgatgtga
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integrated database retrieval system
