Helobdella robusta: HELRODRAFT_182973
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Entry
HELRODRAFT_182973 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03015
mRNA surveillance pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_182973
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_182973
03015 mRNA surveillance pathway
HELRODRAFT_182973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_182973
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_182973
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HELRODRAFT_182973
Spliceosome [BR:
hro03041
]
Complex C
Other components
EJC/TREX
HELRODRAFT_182973
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
20208807
NCBI-ProteinID:
XP_009031940
JGI:
Helro1_182973
UniProt:
T1FJ08
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MADEARYLLENMHKLRVVDLKLELEKRCLSKCGSKNKLAERLKAHLLTEELKEGDGDGSE
LEEVSRSQESESQSEAEDLSQPQQQPQQSSSPSTSSQQHQQQQQSSSPSTSPRQHQQQQS
QRQLQLQQQQQQQQKYNSDADTEDEQSDSATTTTTITTNTTTTTTLQNDGDNDDDSGSFN
ATTGSVANTSATTSNDDTSKSIILSTLVDNTNNNNAATTVTAAAASVAAAASVAAAAASV
AASTAAASVAAVVTTVTTITTNSGNDEASPVVVTTVTSDTLLSVASNSTKSDDDDGGVRD
GGGRGDDDGGDGGVKNVVGREVTEKDEEDMEVTVSSEGKVVGGSNKIKDDVILKNEDGDD
GGGAGDKDNDDGEVGHSGDDDGVKRMVTQNETNDSALMGEDTMEVSISAKINGDDDDEDE
DDDFSRGSDDKKDKQPATNETSAATAAAAAVVEEPVIQLKTHRKLFAKKATKDAAAEASS
LTTGVERSSKKRKWGKIFMETNGRKLSDCVGCSSVTISSESLKDLIPEMTLDLSMTSDPI
LDLEPEQQPQSRSTASTATTAKIVYREKSSNTDGNNNSSLAMAAGTTAAAVADENARVVD
GGSGGGGKGVVRIARIVYQDVRDSTKTISSSSSMDHVASGSGGGGSDSGGRGVYQSRERK
VVERPRSSSSTAVGSSGADRLVRIVDEEGSRRRQDGEDDVINDDVDDGEEEEERGGKDNK
ENGGEEGSASSLAGRSGRREVVVGGGAAGSAASAATAAATSDGTAVVGDGGSKAGGSAVA
TTVQKKRSTSISSTTILTQPPPPDEPVDVVRKRGRDKFTPAGEGLDGGRPQITPPRRQPT
KFVHVFNLVRPFTVGQLKELMGKYGKVIEEGFWIDKIKSHCIYETIDQSTNCRQSLHGRK
WPASNPKLLRVDYCDEEEVSDVDDVNDDDSGGGGSDRVAGGGSSDYNCGDDDDDVDDEDC
GVGMTMLLVVLLTLRKDGVTPSHRPYLGSSSVRPLTSSTNVGDSRISRNPPLLQEPPQQP
PPSSQHHLQQQHSQQQQKRKRSPDATSTRPSQQQPTTTKPPPAAAAASTATTTKTTASLA
MPQSERERAALLAEKENLARKWNRQERSSRSRSRSRGENRHRQQHLQRDSRRDGEDVEVR
RTDAEDDVRRRRKNKRRDDDVEGELRPAKKDKKDEEPPAKLLDDLFRKTKALPCIYWLPL
TDAQVAEKEAHIKKIEQERMKRREERMMADSSHHYHHQMPGGGGGGGFGGPARGYDDRFR
RN
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaagcgagatatttgttagaaaatatgcacaaattaagagttgtcgatctg
aagttggagctagaaaaaagatgtttgtcgaagtgcgggagcaagaataagttggccgaa
cgattgaaagcgcatctgttaacagaagaattgaaagagggtgacggtgatggttctgag
ttggaggaagtaagcagatctcaggagagtgagtcgcagagcgaggcggaagatttaagc
caacctcaacaacagccgcaacaatcttcatcaccttcaacatcatctcaacaacatcag
caacaacaacagtcttcatcaccttcaacatcacctcgacaacatcaacagcaacagtcg
caacgacaacttcagctacagcaacaacaacaacaacaacaaaagtacaactctgatgct
gacactgaagatgagcagtctgattctgctaccactactactactattaccacaaatact
actactactactactcttcagaatgatggtgataatgatgatgatagtggctctttcaac
gccacaactggtagtgtggccaatacttctgctactacctctaatgatgatactagtaaa
agtattattctctccactcttgttgataatactaacaataataatgctgctaccactgtt
actgctgctgctgcatctgtagctgctgctgcatctgtagctgctgctgctgcatctgta
gctgcttctactgctgctgcatctgtggctgctgtcgttaccacagttactaccattact
actaattctggtaacgatgaggcttcgccagtcgttgtcaccactgttacttcagatact
ttgctatctgttgctagtaatagtactaagagtgatgatgatgatggtggtgttcgtgat
ggtggtggtcgtggtgatgatgatggtggtgatggtggggttaagaatgttgtcggtaga
gaggtgactgaaaaagatgaagaagatatggaagtcacagtatccagtgagggaaaagta
gttgggggtagtaataaaattaaggatgacgtcattttgaaaaatgaagatggcgacgat
ggtggtggtgctggcgataaagataatgatgatggtgaagtgggtcacagtggtgatgat
gatggtgtgaagagaatggtgacgcagaatgaaactaatgatagtgcattgatgggtgag
gacacgatggaggtctccatcagcgctaagatcaacggtgatgacgacgacgaagatgag
gatgatgatttcagtcggggttcagatgataagaaggacaagcagccagccaccaatgag
acatcagcagcaacagcagctgctgcagctgtcgtagaggagccagttattcagttgaaa
actcacaggaagctgtttgccaagaaagctactaaagatgcagcagcagaagcatcctcg
ttgacgacaggggtagagagaagcagcaagaagaggaagtggggcaagatcttcatggaa
acgaacggaaggaagttgtccgactgtgtcgggtgtagtagcgtcaccatatcctctgaa
tccctgaaggatctcatcccggagatgaccctcgacctttccatgacctccgacccaata
cttgaccttgaacccgagcagcaaccacagtcaaggtcaacagcctcgacagcgactact
gctaaaattgtgtatagggagaagtcaagtaacactgatggtaataacaattcttccttg
gcgatggctgctggtactaccgcagctgctgtggccgatgaaaacgctagagtggtagat
ggtggtagcggcggtggtggtaagggtgtggtgaggatcgccagaattgtttaccaggat
gtgagggactccacaaagacgatatcgtcctcatcttcgatggaccacgtggcttccgga
agtggtggtggtggtagcgacagtggcggtagaggcgtctaccagtcgagagagagaaag
gtggtggagaggccgaggtcgtccagcagcacggcagtcggcagtagtggcgctgacagg
ctggtgaggatcgttgatgaagaaggcagtcgccggcgtcaagatggtgaagatgacgtc
atcaacgacgatgttgatgatggggaggaggaggaagagagaggtggaaaggataacaaa
gagaatggcggtgaggaaggttctgcgtcgtcacttgccggaaggagcggtcgtcgggag
gtcgtcgttggtggaggagctgctgggtccgctgctagtgccgctactgctgctgctact
tctgatggtaccgctgtcgttggcgatggcgggagcaaggctggtggttctgctgtagct
actactgtgcaaaaaaaacgaagcacctcaatctcctcaactacgatcctcacccaacct
cctccccccgatgagcccgtggacgtggtcaggaaaagaggtagggacaagtttaccccg
gccggcgagggcctcgacggcggacgaccccaaatcacccccccgagacgtcaacccacg
aagtttgtccacgtctttaacctggtgaggcctttcactgtggggcagttgaaggagttg
atgggaaagtatggcaaggtcattgaggaggggttctggattgataagatcaagtcacac
tgcatctacgaaacgatcgaccagtcgacgaactgtcgccagtcgctccacggaaggaag
tggcccgcctccaatcccaaactgctcagggtggattactgtgacgaggaggaagttagt
gacgttgatgacgttaacgatgacgatagtggtggtggtggtagtgaccgtgttgctggt
ggtggtagcagtgattataattgtggtgatgacgatgatgacgttgacgatgaggattgt
ggtgtcgggatgaccatgttgctggtggtgctgctgaccttgaggaaagatggcgtgacc
ccatcacatcgtccttatctcggcagcagcagtgtcagacctctgacgtcgtcaacgaac
gtaggcgattccagaattagtcgtaacccccctctcctccaggagccaccgcaacaacca
ccaccttcatcgcaacaccacttgcaacaacaacattctcaacaacaacaaaaaagaaag
cgatctccagatgcgacgtccaccagaccctcgcaacaacaaccaacgaccaccaagcca
ccaccagcagcagcagcagcttcaacggccacaactactaaaacgacggcctcgctggcg
atgcctcagagcgagagagagagggccgccttactggccgagaaggagaatctggccaga
aagtggaatcgtcaggagaggtcatcaaggtcaaggtcgaggtctcgaggagagaatcgg
caccgtcaacagcatttgcagcgcgatagtaggagagatggtgaggatgtcgaggtgagg
aggaccgacgccgaagacgatgtgaggaggaggagaaagaataagaggagagatgatgat
gtagagggagagttgaggccggcaaagaaagataagaaagatgaagagccaccggccaaa
ttgctggacgacctattcagaaagacgaaggccctaccttgcatatactggctgcccctc
acagatgctcaggtcgccgagaaggaagcacacataaagaaaattgaacaggagcgaatg
aagagaagagaagaaagaatgatggccgacagtagtcatcattatcatcatcagatgccc
ggtgggggtggcggcggtgggtttggtgggcccgccagagggtacgatgataggttcagg
aggaactga
DBGET
integrated database retrieval system
