Helobdella robusta: HELRODRAFT_186112
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Entry
HELRODRAFT_186112 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K13174
THO complex subunit 5
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_186112
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_186112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_186112
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_186112
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
HELRODRAFT_186112
Spliceosome [BR:
hro03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HELRODRAFT_186112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
20210434
NCBI-ProteinID:
XP_009028564
JGI:
Helro1_186112
UniProt:
T1FNN7
LinkDB
All DBs
Position
Unknown
AA seq
780 aa
AA seq
DB search
MSNSKLENVEMADESIDKKKRKLPSKPENKHEPPKLNDKKLFYSEENEVLERDVIEDGKI
HKEVVMQLTSIMDKVNKIKCQPGDLTEAQEDEIEALKIDGIMQFISLRKLNRLGHFRCKC
VREITQDAKQNIDDHHLKLQNLIYEAMHLQREISKCLQFKSKDEDISLISVQEFLNSVDP
EIAKNLIKEGDSHKLMLARLDWELKKRLELSTKLTDSEAKRKAIVNEIESKRRYLKALQP
KLAAILESTKPVEQDLNLTFSETLTQQKLASSLPSPLYFLFVQAYSFSKACDKNMVVSIH
GDVELAQSFHASPALIEEDSDSEDEQAEKKTKKHRRMTIDAKQLRKQQQVMSKHPLSVVV
EIKCQDMGMIKLTFTYYTVLNITAVRADVDLCAKFNSSGDSKMEVDDANSPATFESSSHD
LFSSLSFLQCLYDVDDDGIESPDPNNLFILNKYGISDLPSHIEGTERPYKWVQRLCGLHT
LTTSSSSSLTPRTASDDDANDDVITPSTSSTNSCSSNIKNDHVSRTSYIEKMVILMRRRM
KQRCHLFQQLYRLEKINNNTSECARTFNELLQPYKQKIICRLVEWKPLSYQEYVNLPQNQ
HIVSLDLASNKDFYFMGLLEREATNKNLPSSGSTNQKVTLKFCILIGSDYPVTPPLFSFL
IQWKDMKRMATNDEAVREMECVVNTQMTTASDVLISQIVGMCSCFDVYLETGGVVERCAG
ANVGEDGQEDGPDKSASDTLLDENYTCLVDSQKTFLRIAKGPTRSKPFKFNNQLGFYTHY
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaattcgaaattggaaaatgtcgaaatggccgacgagtctattgataagaaaaaa
agaaagttaccaagtaaaccagagaacaaacatgagccaccaaaattaaatgacaagaaa
ctattctactctgaagagaatgaagtattagaacgtgacgtaattgaagatggcaagatt
cataaagaagtcgtcatgcagttaacatctatcatggataaggtcaataagatcaaatgt
cagccaggtgatctgacagaagcacaggaggatgaaatcgaggcattgaaaattgatgga
atcatgcagttcatttcgctaaggaaacttaacaggctaggacattttaggtgcaaatgt
gtcagggagattactcaagatgcaaagcagaacattgatgaccaccatttaaaattgcaa
aatctcatatatgaagccatgcatcttcagagagaaatctctaaatgccttcagttcaaa
tcaaaggatgaggacatctcattgatatctgttcaggagtttttgaactctgtagatcct
gaaattgcaaaaaatttgatcaaagaaggtgatagccacaaattgatgctagcaagatta
gattgggaactgaagaaaagactggagttgtcaaccaaactaactgactctgaggccaag
aggaaagctattgtcaatgagatagaatcaaagagacgttacttgaaagcactgcagcct
aagctggcagccatattggagtctacaaagccagttgagcaggatttgaacctgaccttc
tcagaaaccttgacccagcaaaaattggcaagcagcctaccatctcctctatattttctc
tttgtacaggcctactcgttttccaaagcctgtgacaagaatatggtggtcagtatacat
ggcgacgtcgaattggctcagtcatttcatgcatctcctgctcttattgaagaggatagc
gatagtgaagacgaacaagcggaaaaaaagacgaaaaagcacaggagaatgaccatcgat
gccaagcagctgagaaagcagcagcaagtgatgagcaagcatcctttgtctgttgtcgtg
gagatcaaatgtcaagatatgggaatgataaagctgacatttacctattacaccgtgcta
aatataacagccgtcagggctgatgttgatctatgtgcgaagtttaactcctctggcgac
agtaaaatggaagtagatgatgctaactcacctgccacatttgagtcaagttctcatgac
ctcttcagttccttatccttcctccaatgcctgtacgacgttgatgacgatggcattgaa
tcacctgacccaaataaccttttcattctcaataaatatggaatatccgacctaccttct
cacatagagggcaccgagcgaccttacaagtgggttcaaaggttatgcggcctgcacacc
ctcacaacgtcatcgtcatcttctcttacccctcgtactgcctcggatgatgacgctaat
gatgacgtcattactccctccactagtagcactaatagttgcagtagcaatattaaaaat
gatcacgtgagtaggacgagttatatcgagaaaatggtgatattgatgaggaggaggatg
aagcagaggtgccatctcttccagcaactctataggcttgagaagataaacaacaacaca
agtgagtgcgcgaggactttcaacgaactactccagccgtacaagcagaagataatctgt
cgactggtcgaatggaaaccactgtcctatcaagaatatgtcaacctaccccagaaccag
cacattgtaagccttgatcttgcctccaataaggatttttatttcatgggtctgctggaa
agagaggcgaccaataagaatctcccatccagtggctcaaccaatcagaaagtcacgtta
aaattttgtattctgattggttcagattatcctgtgactccgccacttttttcgtttctt
atccaatggaaagatatgaagaggatggcaaccaatgacgaggcagtcagggagatggaa
tgcgtcgttaacacccagatgacgacggccagtgatgtgctgatcagtcagatagtaggg
atgtgctcctgtttcgacgtctaccttgaaacgggaggagtcgtggaacgctgcgctggg
gccaacgtaggtgaagatggtcaagaagatggtcctgataagtccgccagtgacactctg
ctggatgagaattatacctgcctggttgatagccagaaaacctttttgaggattgcaaag
ggaccgaccagatcaaagccattcaagttcaacaaccaactgggcttctacactcattat
taa
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integrated database retrieval system
