Helobdella robusta: HELRODRAFT_187538
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Entry
HELRODRAFT_187538 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K10610
DNA damage-binding protein 1
Organism
hro
Helobdella robusta
Pathway
hro03420
Nucleotide excision repair
hro04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
HELRODRAFT_187538
09124 Replication and repair
03420 Nucleotide excision repair
HELRODRAFT_187538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hro04121
]
HELRODRAFT_187538
03400 DNA repair and recombination proteins [BR:
hro03400
]
HELRODRAFT_187538
Ubiquitin system [BR:
hro04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
HELRODRAFT_187538
DNA repair and recombination proteins [BR:
hro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
HELRODRAFT_187538
TCR (transcription coupled repair) factors
Cul4-CSA complex
HELRODRAFT_187538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Lgl_C
Motif
Other DBs
NCBI-GeneID:
20210653
NCBI-ProteinID:
XP_009028765
JGI:
Helro1_187538
UniProt:
T1FPA6
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MSFNYIVTAHKPTSVTACSLGNFTSNNDLNLIVAKNSRLEIFLVTPEGLKPLKEIGIYGR
IALLKLFRPQNSQRDLLFILTARYQVMILECEKNDSNYEIVTKAFGNVQDRVGRASDLGI
IGAIDPSCRYIGLRLYDGLFKVIPLEYDIKELKAFNIRMEELHVVDFQFLSGYNEPTMAM
LYQDGHGRHVKTYEISVRDKEFLRGPWKQDNVETEASLLISVPDPYGGLLIVGQESVTYH
KGESYVAVSPPLIRQSMITCYGKVGMDGLRYLLGDMDGRIFMLLLEVEASSSSIRDIKVE
LLGEASVPECLTYLDNGVVFVGSRLGDSQLIKLNACRNEHGHYIQVLESFTNLGPIIDMC
VVDLEKQNQGQMVTCSGVNKEGSLRVIRNGIGLHELASIDLSGIKGIFALRTGTSKHLHN
VLVVSFVAQTRVLMLNGEELEETELDCIDPDHQTFACSNVAYDQVIQQTSNSLRLGLCET
SELLMEWKPPNGLPISVVGLSSHQVLCATGRDLFYLEILPKEMKVVGQCTLEYEVACITI
PLFDESTTHGTICIVGLWTEVSIKIISLPHLKLIHNESLAGEVLPRSILTITFESITYLL
CALGDGTLFYWVFALDDFSLQCKKKVTIGAQPTTLHLFKSKSTTNIFACSDRPTVIYSSN
QKLVFSNVNLKEVTHMCPLNSHGYPDCLALTSENALTIGLIDDIQKLHIRTIRLYETPRR
IVHQEATETFGLATSRVDVHNENGAYAPKYPCISYNAQAHQQASLYKQHLMSHVDSEPED
LEVHSFLIIDQHTFELLACHQLSASEHITATTSAKFGDDPTTYYVIASCIVNPEEKEPKQ
GKLMMMQYYEGKLILVSEKEVKGAVYSICEFNGKLLAAVNSSIRLFEWTSEKEFRQESSH
LNNILALFLKTKGDFILVGDIMRSITLLMYKPVEGAFEEIARDFNPNWMTAVEILDDDTF
LGAENAYNIFTCQKDSAATTDEDRQHLQEVGLFHLGDYVNVFKHGSLVMNQTGESGCSTH
GSVLFGTVHGTLGLITQLKPEFFSFLLELQQKLTKVIKSIGKIEHSNWRSFRTDRRDEGC
IGFIDGDLIESFLDLSRDKMQAVCSGLTIDEGSVTKKEVTVDDLIKIVEELTRIH
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttaattatatcgttacagctcataaaccgacatctgttacagcttgctctttg
ggtaatttcacttcaaataatgatttgaacctaattgtggcaaagaattcaagacttgaa
atttttttagtaacccctgagggcctaaagccactgaaagaaattggcatatatggaagg
atagcactgttgaagttattcagacctcagaattcccagagagacctcttgtttattctc
accgctcggtaccaggttatgatattagaatgtgagaagaatgattcaaattatgaaatc
gtcaccaaggcttttgggaatgttcaagatcgagttggtcgggcttctgacctgggaatc
atcggagccatcgacccttcttgcaggtacataggactgagactctacgatggacttttc
aaagttattcccctggagtatgatatcaaagaactcaaggcattcaacatcaggatggag
gagctgcacgtcgttgatttccagtttctctctggttacaacgagccaaccatggccatg
ctctaccaggatggacacggtcgacacgtgaagacctacgagatttctgttcgcgacaaa
gaatttctaagaggaccatggaagcaagataacgttgagactgaagcaagtcttctcata
tccgttccagatccgtacggagggttgttgatagtcggacaggagtcagttacgtaccac
aaaggggagagttacgtcgccgtgtcgccgccactcatcagacaaagcatgataacttgt
tacggcaaagttgggatggacggcttgaggtatttgttaggcgatatggatggtcgcatt
tttatgctcctgttagaagtggaggcctcatccagcagcatcagagacatcaaagtggaa
cttcttggagaggcctccgtgccagaatgcttaacttacttggataatggagttgttttc
gtgggatcaagacttggagattcgcagttgataaaactgaatgcgtgtcgaaatgagcat
ggccattacatccaagtgttggaatccttcacgaacctgggacccatcatagacatgtgc
gttgttgacctcgaaaaacagaaccaaggacagatggtcacctgttcgggcgtgaacaag
gaagggtcactgagagtcatcaggaatggcattggactgcacgaactggcgagcatcgat
ctgtctggcatcaaaggaatatttgctctgagaactggcacgtcgaaacatttgcacaat
gtgcttgttgtgtcatttgttgctcaaacaagagttttaatgttaaatggagaagagttg
gaagaaactgagttagactgcatagatccagatcaccaaacattcgcatgctccaatgtt
gcttacgaccaagtcattcaacaaacatccaattccctgagactcggtctgtgtgaaacg
tctgaactgctgatggagtggaagcctccgaacgggctgcccatcagtgtggttggtctg
tcttcccatcaggtactctgtgctacgggcagggatctcttttacttggaaatattgcct
aaggagatgaaagttgttgggcaatgcaccttggagtatgaggtggcttgcataacgatc
cctctgttcgatgaatcgaccacacacggcaccatctgcatcgtcggtctgtggaccgag
gtttcaataaaaattatcagcttacctcatctgaagctcatccacaacgagtctctggct
ggagaagtcttgccccgttctatactgacgattacatttgagagcatcacgtacctgttg
tgtgccctgggggatggcacgttgttctactgggtcttcgctctcgacgacttttcactg
cagtgcaaaaagaaggtgaccataggagcccagccgaccacgttgcatctcttcaaaagc
aagtccaccacgaacatattcgcatgctccgacaggcctactgttatttattcaagcaat
caaaagcttgttttctccaatgtgaacctaaaggaagtgacccacatgtgccccctcaac
tcacatggataccccgactgcctggctctgaccagcgagaatgcattgaccatcggtctg
attgacgacatccagaagctgcacatcaggaccatccgactctacgagacgccgaggcgt
atagtacaccaggaagctactgaaacgtttggactggcaaccagcagagttgatgtgcac
aatgagaatggtgcttatgctcccaagtacccatgcatcagctacaatgcacaggcgcac
cagcaggcttcactgtacaagcagcacctgatgtcgcatgtcgacagcgagcctgaagat
cttgaagtccacagtttcctcatcattgatcaacacacattcgaattattggcatgtcac
cagttgtcagccagtgagcacattacggccacgacatcagcaaaattcggagatgatcca
actacatactacgtcatagcctcgtgcattgttaatccggaagaaaaagaacccaagcaa
ggaaaactgatgatgatgcagtattatgaaggaaaattaatattagtgtcagagaaagaa
gtgaaaggggcagtttactccatctgtgagttcaatggcaaattgttggcagctgtaaat
agttctatacgtttgttcgaatggacatcggagaaggagtttcgccaggaaagtagccat
ctcaacaacattttagcactgttcttgaaaacaaaaggtgacttcatcctcgtcggtgac
atcatgaggtccatcactctcctcatgtacaaaccggtggaaggtgccttcgaagagatc
gctcgagatttcaacccgaactggatgactgcggttgagatattagacgatgacacgttc
ctgggagctgagaatgcctacaacatcttcacctgccagaaggatagtgcggcaacaacc
gacgaagacaggcagcatcttcaagaagttggacttttccacctcggagattatgtaaat
gttttcaaacatgggtcgctggtaatgaatcaaacaggggagtcaggatgctcaacacac
ggatctgttctttttggaacggtacatggaactctaggtctcataacccaattaaagcca
gaatttttttcttttttgctggaacttcagcaaaaattgaccaaagttatcaagagtatt
ggcaagatagaacattcgaactggagatcattcagaacagatcgtagggatgagggatgc
attggatttatagacggagatcttatagaaagttttcttgatctgagcagagataagatg
caagccgtctgctccggtctcacgattgacgaaggcagtgttacaaaaaaagaagttact
gttgacgatttaataaaaattgtcgaagaactgacgagaatccattaa
DBGET
integrated database retrieval system
