Helobdella robusta: HELRODRAFT_187909
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Entry
HELRODRAFT_187909 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
hro
Helobdella robusta
Pathway
hro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HELRODRAFT_187909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hro03400
]
HELRODRAFT_187909
DNA repair and recombination proteins [BR:
hro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
HELRODRAFT_187909
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_II
MutS_IV
MUM1-like_PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
20210714
NCBI-ProteinID:
XP_009009263
JGI:
Helro1_187909
UniProt:
T1FPG7
LinkDB
All DBs
Position
Unknown
AA seq
1412 aa
AA seq
DB search
MAKTPKSADKKMKTIFSYFNKTPSEKRSALTSQSDQNSEIDKVASAPKLRDEEIVANLKV
NEGDLVWAKMQGHPWWPSLVCKHCKEGKFWKKENATMKIHVQFFGSPPSRGWVKEMSIKP
FTGSSSKDCQKGGFLHCHQAAWKDALKEADKALHVSVEARDKLVVTIDSSDDLKKGKDDK
ENAPGNSESMSSSSTPKRKSTRNTGKNKRRRIIMDSDEEEEAGDDSNEESFQPSTEEDST
DDGVSEGDSDETNNNHNSDDDDDDNGGKPIKTKKRSRGGKIKSESKVEKSPTRGVVRVFP
NQIVKRSRPKKLKKTDDDKDDDMKIDMCDDSEDRKTQVKTAQTTSPNSSGQRTFPHTSFK
FLQPPYIMDANRRKEDDPDYDPKTLYVPVDFLNKQTPAMKQWWVLKSQYFDTLLFFKMGK
FYELFHMDAVIAVNELGLLFMKISTNNEHFHVKIFESNHYSVINYTSTICTQGDHAHCGF
PEISYGRYSDILVQRGYKVARVEQTETPDQMQERCKQTKSSSKIDKVVRREICSVQSKGT
KRSSFIDGDCSGTNHNFLLAIAEKNVGSKSTYGVCFLDVMIGKFYVGEFEDDRHGSRLRT
LASHHPPVQVLYEKGKLSEKTKMIFNGCLSQCLKEGLKSSTEFWDATKTLKQLHELKYFL
PAGNDDNDDENADGVDNKTEWPEIFHKLTDPDDPLRLTPSSTFQLALSALGATVWYLRRC
LMDEELLSLKSFELYTPVDYNTEQTNGRSGSEHGNISNVDEDAADESYSSQCNRSSQSVE
STNKRMVLDGVTLVNLDVLVNSSNGTIEGTLLQKLDSCKTAFGKRLIKQWLCSPLCNVSS
INDRLDAMEDLMKVKEVTASIVPLLAKLPDLERLLNKIHTLGSSKRNKNHPDSRAVFFED
VVYSKRKIEDFLQTVEGFRTTLSIIKKFSNSTSDFKSNILKQCVLMKSEDDQVGRGAGRF
PNIKPTLDFFDSAFDHQKARSAGVIKPMLGVNKNYDCAVNDIKSIEDKLNGLLDHLKKQL
GCKTLTYFGTARNRYQVEVPEAFCRKISDDFEVTSQRKGFKRYQSEEIKRWFAKLMDAED
RRDEAQRDTMRCIFDQFDRHYNKWIEATQCIAVLDVLLSLSVYSGQSDGVMCRPNVVPYL
KESFVEIRSGRHPCIGGRTFVGGDYIPNDTIIGQQDESSSSPRVLLVTGANMGGKSTLMR
QVGLICLLAQLGCYVPAEVCRLTPVDRIFTRLGASDHIMSGESTFFVELSETSCVLQHAT
KHSLVLLDELGRGTATYDGNAIASAVLQELSDNIRCLTLFSTHYHTIVERFSSNRNVSLA
HMACMVENEDDDDPTQETITFLFKLSSGNCPKSYGFNAARLAGIPDQVIREAHTKARQFE
ESVRTIKMFRQLWRMKSSEAATKNISSIISQI
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaacccccaaatctgccgataaaaaaatgaaaacaatattttcttattttaat
aaaacaccttctgagaaacgaagtgcactaacgtcacagtccgatcagaacagcgaaatt
gacaaagtagctagcgcgccaaaattgagagatgaagaaattgttgcaaacttgaaagtg
aatgaaggggatttggtgtgggccaagatgcagggccatccatggtggcctagccttgtt
tgcaagcattgcaaagaaggtaaattttggaaaaaagaaaatgcaaccatgaagattcat
gttcaattttttggcagtccaccaagtcgaggatgggttaaagagatgtctataaagcct
ttcactggttcatcatcaaaggactgccagaagggaggttttctgcactgccaccaggct
gcatggaaggatgctctaaaggaagctgacaaagccctccatgtcagcgtagaggctcgg
gataagttggttgtcacgatcgattcatcggatgatcttaagaaaggcaaagatgataaa
gagaatgctccaggaaattcagaatcaatgagctcctcgagcactccaaagcgaaagtcg
acacgaaacactggcaagaacaaacgtcgtcgcataattatggattctgatgaagaagaa
gaggctggagatgactcaaacgaagaatcattccaaccatcaacggaagaagattccacg
gatgatggcgttagtgaaggtgacagtgatgaaacaaataacaaccacaatagtgatgat
gatgatgatgataatggcggcaagcctataaaaactaaaaagcgttccagaggaggcaag
attaaatcagaatcaaaagttgagaagtcgccaacaagaggtgtcgtaagagttttccca
aatcaaatagtcaaacgtagtagacctaaaaagttgaagaaaactgatgatgataaagat
gatgacatgaagatagatatgtgtgatgatagtgaggaccgaaagactcaagttaaaact
gcacaaacaacatcaccaaattcaagcggacaacgaacattcccacacacatctttcaaa
tttctgcaacctccctacatcatggacgcaaacagacgtaaggaagatgatcctgattat
gatcctaaaactctctacgtgccagttgattttcttaacaagcaaaccccagccatgaag
caatggtgggtattgaagagtcaatattttgatactttacttttcttcaagatgggaaag
ttttatgaactgtttcacatggatgcagtcattgcggtcaacgaattaggcttgctcttc
atgaagatttcaacgaataatgaacactttcatgttaaaatttttgaatcgaatcattac
agcgtcattaactatacaagtaccatctgtacacagggtgatcatgcccactgtggattt
cccgagatatcgtacggtcgatactcagacattcttgttcaacggggctacaaagttgct
cgtgttgagcagacggaaacacccgatcagatgcaggagagatgcaaacaaacaaaatct
tcaagtaagatcgacaaagtagttcgcagagagatatgtagcgtgcaatcgaaaggaacc
aaacgatcgagttttattgatggagactgctcaggaaccaatcacaactttcttttggcc
atcgctgaaaagaacgttggttcaaaatctacatatggagtttgttttttggatgtcatg
attggaaaattttatgtaggcgagtttgaagatgacagacacggctcgaggttgaggaca
ctggcatctcaccacccacctgtccaggtgctgtatgagaaaggcaagttatcagagaag
acaaagatgatattcaatggttgtttgagtcagtgcctcaaggaaggactcaaatcttcc
actgagttttgggatgccacaaaaacgttgaagcagcttcacgagttgaaatattttctc
cctgctggaaatgatgacaatgatgatgagaatgctgatggtgttgataataagacagag
tggcctgaaatatttcacaagcttacagatcctgatgacccccttcgtttgacaccatct
tcaactttccagctggcgctttcggccctaggtgccaccgtttggtaccttcgccgttgt
ctcatggatgaagagttgctttctctgaagtcttttgaattgtacacgcctgttgactac
aataccgaacaaactaatggcaggagtgggagtgaacatggcaacatttcaaatgttgat
gaagatgcggctgatgaaagttattccagtcagtgcaataggtcctcacagtccgttgag
agcactaacaaaagaatggtgttggatggggtgacattagtgaacttggacgtgttggtc
aacagcagcaatggtacaattgaaggcactctgctccaaaaacttgattcctgcaaaact
gcgtttggcaaacgtttaataaagcaatggttgtgctctcctttgtgcaatgtgtcatcc
atcaatgatcgactggatgccatggaggacctcatgaaggttaaggaggtcacagcttcc
atagttcctctgctggccaagttgcctgacttggagagattacttaataaaattcatacc
cttggctcttcaaagaggaacaagaaccacccagacagcagggctgtattttttgaagat
gtagtttatagcaaacgcaagattgaagatttcttgcaaacagttgaaggcttcagaacc
acactctccatcattaaaaaattttcaaactccacctcggacttcaagtccaacatattg
aagcagtgtgtgctgatgaaaagtgaagatgaccaggttggacgtggggccggcagattt
cccaacatcaaaccgacattggatttttttgattctgcctttgatcatcagaaagcaaga
tctgctggcgtcatcaagcccatgttaggggtgaacaagaattatgattgtgctgtgaat
gacattaaaagtattgaggacaagttgaatggtctgctggatcatctgaagaagcaactt
ggctgcaagacactgacatattttggtacggcacgcaacagatatcaggtggaagtgcct
gaagcattttgtcgtaagatttcggatgattttgaagtgacgtcacagaggaagggtttc
aaaaggtaccaaagtgaagagataaagaggtggttcgcgaagctgatggatgcagaggac
aggagggacgaggcgcagagggacaccatgagatgcatattcgaccagttcgacaggcat
tacaacaaatggatcgaagcaactcagtgcattgcggtgcttgacgttctgttgtccttg
tccgtgtacagcggtcagtcggatggtgtcatgtgcaggccgaatgttgttccatacctc
aaagagtcattcgttgagataagaagtggccgacatccatgcatcggcggcagaacattc
gttggaggggactacatacctaacgataccatcattggtcagcaggacgaatcctcatca
tcgcctcgagttttgttggtgacaggtgcaaacatgggtggaaagtcaacactgatgaga
caagttggactcatatgcctgcttgctcagttgggttgttatgtgccagcagaggtgtgc
aggttgacccccgtggacaggatcttcacgcggttgggtgcctccgaccacatcatgtca
ggagagagtaccttctttgtggagttgagtgaaacttcgtgtgttctgcaacatgcaacc
aaacattccctcgttctcctcgatgaattgggtaggggcacagccacgtatgatggcaat
gcgattgcaagcgcggttctccaggagctgtcggacaacatacgatgcctcaccctcttc
tccacacattaccacaccatcgttgaacgattttcatccaataggaatgtttccctggcg
cacatggcctgcatggtggagaatgaagatgacgatgatccaacccaggaaaccataaca
tttctcttcaagttgtcttcaggcaattgtccaaagagttacggattcaacgccgctcgc
ctggctggcattcccgatcaagtgataagagaggctcacacgaaagcacgtcagtttgaa
gaatcagttaggaccatcaagatgttcaggcagttgtggcgcatgaagtccagtgaagct
gccacaaaaaacatttcatcgattatttcacaaatctga
DBGET
integrated database retrieval system
