Helobdella robusta: HELRODRAFT_190610
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Entry
HELRODRAFT_190610 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K14312
nuclear pore complex protein Nup155
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_190610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_190610
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
HELRODRAFT_190610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
20211644
NCBI-ProteinID:
XP_009012818
JGI:
Helro1_190610
UniProt:
T1FS47
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MTYSNLQILPESLYFYSTDNVHITMIVGTDNGRVFLAGRDGCLYELDYQLYYLGKDGTKL
ISIDSISHDKSVKKIMNMIKNVDRSKFSPIVQMCCVRAFESDRIHLVAVTSSGIRFYYTT
RAPTENAPPPTAAPNCLTLFHIRIPPGFLGQINAMSSSMTSTMFHVEQPNNVHMAASCRE
LIESRFTPTNKDADKLPGPTNDVIFPDAPAVVTQLYSTNKKFAIVSTVGICIVTKLKPCD
QLAQLLVKYNVDSEPVRMYFQVLKEQAMTNCLMIMCSKDAAHSQLINLVTRAYNMYKWDH
ITSLNARNVLIGQTSTPLPGHGQQPLPGRNLSFMNSPNPNQRHLTPSWPTSPLSTSSPLP
PPSSSVAGIGGPPQLLSAVPQPASSSSSSSSSSGVMSLNHRSLYLFLARILRPVWSKPIA
VSVMHKDMKTVLISSRLNSNQLSIILQKCQDFKGLLKDNPSLLQGPPSTSATPFNHSGGL
NAPSLYGATNGHHYGGGIYGGAGGGHNDYQDRLLASTFDQLACSGNRDVCKQLIRALIEF
YIEDNASIDVVSARLREYCSYFYSALDQAQTKGSEFIKVAKTVHSVAEKNKLINLALQQY
KIVCNSEVTAPTTTTTPATTTSALLQQKQTADLPTMCSRLASATAYTSLVDLVLTAAAKR
DPNNLALHFYLHYKPTEDLEGLKYFNIRADCYKSITETLDYLLSLVNSVDNHTLDGNPDS
EMENGGLGSKLGSLVSPLFGIGEKKKDASMMNNNGGVVISREEADRQISEMLHTIVKSDD
QMCHYALFTWMISNSMQDRLLQLSSPYMETFLKIESTPQQLQPQPQQQQQLSIQQQQFQN
SISDLLTRYYIREKKFTQAARILDKMALEPGNHITLKDRLDYMSRAALCLQSSSALPASS
SSSGVVGGVGVPQTVGEFMREVQEKVEVILLQMEVMKYIERSADKFDSNEIKMVVMNLNS
QLYDVSELYSKFAIPFELSACKLAILHSSGHVEVNLIQSLWKEIIVNEFSQTASRAADVH
YSMQTISTALSSVGKLYHKTDHFFPIDFLVQCLEQMSVQNGFDLVDLSFVYKIFLDIGVD
VVQLHEAYERVYRQKLSYYLVEVQANMNQGERLIVKLKELQFKIQRLVAIK
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacagtaacttacagatccttccagaatcgttgtacttctactcgactgacaac
gtgcacattacaatgattgttggcactgacaatggcagggttttcctggctggtagagat
ggctgtctctatgaattggattatcagttgtactacctcggcaaagatggcacgaagctg
atcagcattgactccatcagccatgataagagtgtcaaaaagatcatgaacatgatcaaa
aatgtagacaggtcaaagttcagcccgatcgttcagatgtgttgcgtgcgtgcatttgaa
tctgaccgcatccatcttgtagctgttacatcttcggggattcgattctactacacgact
cgagctcccacggaaaatgctccaccaccgacggccgcccctaactgcctaactctcttt
catattaggataccccccgggtttttgggtcaaattaatgctatgtcgtcatcgatgacg
tcaacgatgtttcacgttgaacagccaaacaatgttcacatggctgcaagttgtcgagag
ctcatcgagagtaggtttactccgaccaataaggatgctgataagttacctggaccaacc
aatgacgtcattttccccgacgcccccgctgttgtgacgcagttatattcgaccaataag
aaattcgctattgtctcaactgttggcatatgcatagtaacaaaattgaagccttgcgat
caattagctcagctgctggtcaagtacaacgtcgattcagaaccagtccgcatgtacttt
caagttttgaaggagcaagctatgaccaattgccttatgataatgtgctccaaagatgct
gcccattcacagttaatcaatctagtcacaagggcctacaacatgtacaagtgggaccat
ataacaagcctaaatgcaaggaacgttcttattggccagacgtcaactccattgcctgga
cacggtcaacagccattaccaggcagaaacctatccttcatgaattcacccaaccctaat
caaagacacctgactccatcttggccaacgtccccactgtcgacatcatcgccacttccg
ccaccgtcgtcgagtgtggctggcatcggcgggccaccgcaattattatcagcagtgccc
cagccagcgtcatcatcatcatcatcgtcgtcgtcttctggtgtgatgtctcttaatcat
aggagtctgtatttatttctggctagaatattgagaccagtgtggtctaaaccgatcgca
gtgtctgtgatgcacaaggatatgaagacagttttgatatcaagtcgattgaatagcaac
cagctgtccatcatcttacaaaagtgccaagatttcaagggcctcctcaaagacaacccc
tcccttcttcaggggccgcccagcacttccgcgacccccttcaatcattccgggggtctt
aatgccccctcattgtatggtgccaccaatggtcatcattatggtgggggtatttatggt
ggtgctggcggcggtcataatgactaccaagacaggcttttggccagtacatttgaccaa
ttagcttgcagtggtaatcgtgacgtctgcaaacagttaattagggctttgattgagttt
tatatagaagataatgcctcaatcgatgttgtcagcgctcgactcagagaatattgctcg
tatttttatagtgctcttgaccaggcacagactaagggtagtgaatttataaaagtggca
aagacagttcacagtgttgctgagaagaataaacttatcaatttggctcttcagcaatac
aaaatagtatgcaactcggaggtcaccgcaccaactacaacaacaacgccagcaacaaca
acctcagcactactacagcaaaaacaaacagctgatctgccaactatgtgctctcgttta
gcttcagcaactgcctacacctcattggtcgacctagttctcacagctgcggccaaacgt
gatccaaataatttagcgcttcatttttacttgcactataaaccgactgaagaccttgag
ggccttaaatatttcaacattcgggccgactgctataaatcaataaccgaaactttagat
tatttattatctttggtgaatagcgtggataatcatacgttggatggaaatcctgattct
gagatggaaaatggcggattaggcagtaagttaggaagtctggtctcgccactgtttggc
attggtgagaaaaagaaagatgcaagcatgatgaataataatggaggggtggtgattagt
agagaggaagctgacaggcagatctcagagatgttacacacaatagtgaagtcagatgat
cagatgtgccactatgcactattcacctggatgatatctaacagcatgcaagacaggcta
ctgcagctctcatcgccgtacatggaaacattcctgaaaatagaatcgacaccccaacaa
ctgcagccccaaccacagcagcagcagcagctgtcaatacagcagcagcagtttcaaaat
tccatatccgatctactaaccaggtactacattagagagaagaagttcacccaggctgct
agaatattggacaagatggcactggaaccagggaaccacataacattgaaagacagactc
gattacatgtccagagccgcactatgcctgcaatcatcatcagccctaccagcatcatca
tcatcatctggggttgttggtggggtgggggtgcctcagacagtgggtgaatttatgagg
gaggtgcaggagaaagttgaggtgatcctattacaaatggaggttatgaaatatatagaa
aggtcggcggacaaattcgatagcaatgagataaaaatggtcgtcatgaatctaaactca
caactatacgacgtatctgaactgtattcgaagtttgcgattccatttgagttgtcggct
tgcaagctggccatccttcacagctcaggtcacgtcgaggtcaacctcatccaatcactt
tggaaggaaattattgttaatgaattctctcagacagccagcagggcagcagatgtgcat
tacagcatgcagaccatttcaactgctctctccagcgttggaaagctgtaccacaaaacc
gaccacttctttcctattgactttttggtacagtgcctagagcaaatgagtgtgcaaaac
gggtttgaccttgttgacctgtcatttgtttacaagatatttttagatatcggcgttgat
gtcgttcaactacatgaggcgtacgaaagagtgtacagacagaagttgagttactatctc
gttgaagtccaggccaacatgaaccagggagagcgactgatagtaaaactgaaagagtta
caattcaaaatccaaagattggttgccataaaataa
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