Helobdella robusta: HELRODRAFT_191960
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Entry
HELRODRAFT_191960 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hro
Helobdella robusta
Pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_191960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_191960
03009 Ribosome biogenesis [BR:
hro03009
]
HELRODRAFT_191960
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HELRODRAFT_191960
Spliceosome [BR:
hro03041
]
Complex A
U2 snRNP components
U2 related factors
HELRODRAFT_191960
Complex B
HELRODRAFT_191960
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
HELRODRAFT_191960
Ribosome biogenesis [BR:
hro03009
]
Eukaryotic type
90S particles
Helicases
HELRODRAFT_191960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
SRP54
AAA_30
ABC_tran
Flavi_DEAD
T2SSE
AAA_7
AAA_25
TsaE
Motif
Other DBs
NCBI-GeneID:
20212110
NCBI-ProteinID:
XP_009018356
JGI:
Helro1_191960
UniProt:
T1FTG3
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRHRIDVGDSSSSSKKRSDDDSKPVVSNVASFPTVKSILTQNPFTGLPFTPKYWELYK
KRTNLPVWEYKEKFIDILNKNQCLVLVGETGSGKTTQIPQWCLEWVRARYTKKGVACTQP
RRVAAMSVAARVAEEMDVGLGQEVGYNIRFEDCTSSKTILKYMTDGMLLREAMSDPLLEA
YGVVMLDEAHERTLATDILMGLLKEVSRQRADLKIVVMSATLDAGKFQQYFDNAPLMSVP
GRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEESEGDILLFLTGQEEIDEACKRIQREI
DNLGPEVGELKCIPLYSTLPPNLQQRIFEPPPPKRPNGAIGRKVVVSTNIAETSLTIDGV
VFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNE
MQDNTYPEILRSNLSAVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAAIDDDG
ELTELGSMMAEFPLDPQLAKMVIASCDYNCSNEILSITAMLSVPQCFVRPTEVRKQADEA
KMRFAHIDGDHLTLLNVYHAFKQNHDEAQWCYDNFINYRSLKSADNVRTQLARIMDRFNL
RRSSTEFSSRDYYINIRKALVSGYFMQVAHLERTGHYLTVKDNQIVQLHPSTCLDHKPEW
VLYNEFVLTTKNYIRTVTDIKAEWLIQITPQYYDMSNFPQCEAKRVLEKLIAKMDSKQQ
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgacacagaattgacgttggtgattcttcatcttcatctaaaaagagatcg
gatgatgattcaaagccggtggtttcaaacgtggcgagttttcccactgtcaagtcaatc
ctcacccaaaatcccttcactggtctgccattcactcctaaatattgggagctgtacaag
aaacgtaccaatctgccagtgtgggagtacaaagaaaaattcatcgacatcttgaacaag
aaccaatgtcttgtgcttgtcggtgagacaggttctggcaaaacgactcaaatacctcag
tggtgtctggagtgggtaagagcaaggtacactaagaaaggtgtggcgtgcacccaacct
cgaagggtggccgccatgtcagtcgctgccagagtggcagaggagatggatgtcgggctg
ggacaggaggtcggctacaacattcgatttgaagattgcacatcgagcaagacaattcta
aagtacatgactgatggtatgctgttgagggaggccatgtcagacccccttcttgaggcg
tacggggttgtaatgttggatgaggcccacgaacgtaccctggcaactgacatcctcatg
ggtctcctcaaagaagtttctagacaaagggcagatttgaagattgttgtcatgagtgcc
actctcgatgccggaaaattccagcaatactttgacaatgcccccctgatgagtgtacct
ggcaggacccacccggttgaaatcttctacacccctgagccggagcgagattatctggag
gcggccattagaactgtcatccagatacacatgtgtgaggagagtgaaggagatatactg
ctcttccttactggacaagaggaaatcgatgaggcatgcaaacgcatccaaagagagatc
gacaacctggggccagaggtaggagaactcaagtgcattcccctctattcaaccctccca
cccaatcttcaacaacgcatctttgaacctccacctcccaaacgacccaacggcgccatc
ggcagaaaagtcgtagtgtcaacgaacattgcagaaacttcactgacaatcgacggtgtt
gtcttcgtcattgatcctggatttgccaaacagaaggtgtacaatccgagaatcagggtg
gagtcgttgctggtcactgctatcagtaaggccagtgcccagcagagagcgggtagggca
ggcagaacccgaccgggaaaatgtttccgcctctacactgagaaggcctacaagaatgag
atgcaggacaacacctacccagagattctacgatcgaatctcagtgccgttgtcctacaa
ctgaagaaattaggaatcgatgatttggtgcactttgattttatggacccgcctgcgcct
gagactttgatgagggcgttggaacttttaaattatttggcggccattgatgacgatggt
gaacttacagagcttggctccatgatggcagaatttccactggatccgcaacttgccaaa
atggtcatcgcaagttgcgattataactgctctaatgaaattctttccatcactgctatg
ctgtctgttccgcaatgtttcgtgaggcccaccgaggtgaggaagcaagcagatgaggcc
aagatgagatttgcgcatatcgatggcgaccacctcacacttctcaatgtctaccacgct
ttcaaacagaatcacgatgaagcacaatggtgctacgacaacttcataaactatcgatcc
ttgaagagtgcggacaacgtgaggacccagctggctcgcatcatggataggtttaatcta
cgacgctccagtacagagttcagttccagagattactacatcaacattaggaaggctctt
gtctctggatactttatgcaggtggcccacctcgaacgcactggccattatctgacagtg
aaggacaatcagatagtccagttgcacccatcaacctgtctcgaccacaagcctgaatgg
gtcctctacaacgagttcgtcctcaccactaagaactacattagaactgttactgatatc
aaggctgaatggctaatacagatcacgccgcaatattacgacatgtcaaactttccgcaa
tgtgaagctaaacgagtcctagagaagctcattgccaagatggactcgaaacaacaataa
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integrated database retrieval system
