Helobdella robusta: HELRODRAFT_192938
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Entry
HELRODRAFT_192938 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K16175
protein scribble
Organism
hro
Helobdella robusta
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
LRR_14
LRR_8
PDZ_6
Mpv17_PMP22
LRR_4
PDZ_2
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
20212454
NCBI-ProteinID:
XP_009023423
JGI:
Helro1_192938
UniProt:
T1FUF8
LinkDB
All DBs
Position
Unknown
AA seq
1799 aa
AA seq
DB search
MNCIPMWNACNRQIDYINKQHAGLIAIPDDILRYGKTLEELLLDANQLRELPKKLFQLTL
LKKLTFSDNQIIKISSDIGQLVNLQEIDGSRNELMDIPDTIRHCKELHFVDFSNNPLQKF
PLGFTQLQNLANLSLNDTSLSMLPNDFGSLTNVEALDFIENLSNIYCILTNLETLELREN
LLKYLPMSITSLTKLKLLDLGSNSFEELPETIGSLVNLEELLLDSNELSSLPVELGNLKK
LTQLDVSENKLDKLPEQIGNLLNLSDLLLSENQVEYLPDSIGLLKKLTVLKADQNHLIHL
TTKIGNCSSLQELILIENLILEIPPTIGKLKYLMVLNVDRNRIQVIPKEIGSCTRLGVFS
IRDNNISLVPQEIGNLRQLKVLDVAGNRLCNLPLALGSCPLKALWLSENQATPLLKFQKD
EDDDGEKVLTCFLLPQQRCNVTVNNNNNNKDDNNNNNNDDDHQLRSNNNTLDRETSWADQ
PRLSTVRWDVEEPAASENKSETHFHRQNTPFPKELRTRHHPHKPHHPPHVMKDSFDRAKN
TESDPLLPATTTSLRQQQQRNDVTSTTSGIPNVTSSTSGIPSFSLPGTNQRTKNWINASL
DTTTESNNLLSLDGILNQQKRGFGLANSKTRISSTANETTDSKAIPTFEKLPNSKNKTPQ
NLKSDDDDDDDDVTMTMDGMREERINIHFTRKPGVGLGISIAGGVGSTPFRGDDEGIFIS
RVTPGGPCHLAGIMVGDKLLEVNGNSLVNADHHRAVSVLKDAGNDVTAVVARLVAMENKG
IANQANFLNNNNNNNNNNTVKNERIVNGEKDDDDDDVADEDGGFDWKPIKATLKKIPGKG
LGFSIVGGREAAGNRDGDESIYISKITAGGLVDLQTNLKQGDKLIAINNVDVQSIDHSEV
VNLLMMPANTVEILAHRKARLPRPSALQQQQQQQQRNSSFNQQQQQQLLNNNNNNNGNDG
SSRRMRNGSVNNYDDENYLFKPKSKTLLNTSSTSSKMGNNISPPFSTTTTSITTTTLSNS
FTSNNSNIQKLLTINTSTPPSMFSTKSTTSVVSPVEILFTSSPSYNNPPPTTTSMTSSST
SSSTTAARTSSAPSAAATLATASLPLKSVKTNGRNFENDVINNGADNNTTSLPKVPKVKK
SSKKSRMNKSGDGDDDDDDDVGGGRNDDDVTIDQSMEDLILADNSVNHGEKKKTKKKKKD
KHSVETIVIEKNGGPLGMSIVGGVDRICHPFGVLDPGVFISKVVENGAASHYNLKIGDRI
LAVNGNSLKEATHHEAVSSLVSPASEVTLLVQHDPPPPGLQEIKLIKREGEKFGLTIKGG
VDKLGGGNKMGGNPEDDADEGIFISKINPIGVIAKDSRLKVGQRILEVNGISLLGVTHDD
AVQSLRSIQGGFTLLVCDGYQPKSEKDDEKINNQPLERFYSTSSVDRLAGDSFDQQTVVT
KQLKFGSSPARHATSSSSSHAAAATTATSSSFATKPPQPSSSSSASSSMMVKKKKKKIFS
SAEHLLVDHDLENVPTAATAAAAAADDANANASSSSPSKRIVKKKKLKVNQSFDTANDSV
NNNYGGINMDSSLIISPSRKKYDHGDDGDDDDDVIKEIKKIKGRKKLLVCRLKRHRLLIT
NTLANGFLLAAGDFVVQQVDRYNEKKLNPESVREFVDWQRTKRFLITGLCFGPVLHGWYS
LLDWKFPKATIRSVAWKVFYDQTIACPCSITYFFFATGLQEGKRFKECVAELKEKFVAAY
LVDWLIWPAAQTFNFFFIPPTFRVIFVSSTTFVYSIFLSYIKNIELTSEHKWLSAFKIE
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcattccaatgtggaatgcctgcaataggcagatcgactacatcaacaagcaa
catgcgggactgatagccatcccggatgacatcctcaggtacggaaaaaccctggaggaa
cttttgctcgatgccaatcagctcagggaactacctaagaaactctttcaattaactttg
ttgaagaaattaacatttagtgacaaccagatcataaaaatctcttcagacattggccag
ttggttaatctccaagagatagatggcagtagaaatgaattaatggacatcccagataca
ataagacactgcaaagaattacattttgttgattttagcaataatccattacagaaattt
cctctgggttttacccagctgcagaatttagccaacctatcactgaatgacacgtcacta
agcatgctgcccaatgactttggaagtctaacaaatgtggaggcgttagattttatagaa
aacctgtcaaatatctactgcattctaactaatttggagaccttagaacttcgtgagaac
cttttaaagtaccttcctatgtcgattacctccctaactaagctcaagcttcttgatttg
ggcagtaacagttttgaagaactccccgagacgatagggtcgttggtgaatttggaggaa
ttattgttggactctaacgaattatcgtcactgcctgtggagctaggcaacctaaaaaag
ttaacccaattggacgtctcggaaaataaactggacaaactgccggaacagattggtaac
cttttgaacttgtctgacctacttttgtcagaaaatcaggtcgaatatttaccagatagc
ataggacttttgaaaaagttaacggttttgaaggccgatcaaaaccacctcatacacttg
actacgaagataggaaattgttcaagtctgcaagagttaattctcattgaaaacttaata
ctggaaattcctcccacgattggcaaattgaaatacctgatggtcctcaatgttgataga
aacaggatccaagtgatcccaaaagagatcggatcttgcacgcgattgggtgtcttcagt
attcgcgacaacaacatcagcctcgtcccgcaagaaatcggtaatctcaggcaactgaaa
gttctcgatgtggcgggaaacaggctatgcaatctaccattggctcttggttcttgtcct
ctgaaagccctctggctgtctgagaaccaagccacgccccttcttaaattccaaaaggat
gaagacgacgacggcgaaaaagtgcttacgtgtttcttattaccccagcagcgatgcaac
gtcacagtcaacaacaacaacaacaacaaagatgacaacaataacaataacaatgatgac
gaccatcaactaagatccaacaacaacaccctggatcgagaaaccagctgggcagaccaa
cccaggctgtccactgtcaggtgggacgtggaggaaccggctgccagtgaaaataaatcc
gaaacgcacttccatcgccagaacacccccttccctaaggaacttcgaactcgtcaccac
ccccacaaaccacatcatcctccacacgtcatgaaagattccttcgatcgagccaaaaac
actgaatcggatccgctccttccggctacaacaacatcgttgcgtcagcaacaacaacga
aacgacgtcacgtctacaacatctggaattcccaacgtcacatcctcgacttcgggaatt
ccaagtttcagtttgccggggaccaatcagaggacaaagaactggatcaatgcttcgctg
gacactaccactgagtcaaacaacctcctgtcattggacggaatattgaaccagcagaag
cgaggcttcggactggccaattcaaaaaccaggatcagctcgacagccaatgagacgaca
gatagcaaagccattccgacatttgaaaagctacctaactccaaaaataaaacgcctcaa
aatttaaaatcagatgacgacgacgacgatgatgacgtaacgatgacgatggatggaatg
agagaagaaagaataaacatccattttacgagaaaacctggagtcgggttagggattagt
attgccggcggagtggggtccacaccattcaggggagatgatgagggcatcttcatatct
cgtgtgactccaggaggaccttgccatcttgctggcatcatggtgggagataaacttctg
gaggtgaacggcaactcgttagtgaacgccgaccaccacagagccgtcagcgttctcaaa
gatgccggaaatgacgtaactgccgtggttgccagactcgttgctatggagaataaaggg
attgctaatcaggccaattttctcaacaacaacaacaataataataataataatacagtt
aaaaatgaacggatcgtgaatggagaaaaagatgatgatgacgacgatgttgcagatgag
gatggcggatttgattggaagcccattaaagccaccttgaaaaagatacccggaaaggga
ctcgggttttccatcgtgggggggagggaagcggccggaaatagagacggtgacgagtcc
atctacatttcaaaaatcacggccggaggtttagttgatctgcagacaaacctgaaacaa
ggggataagttaatagcgatcaacaacgtagacgtgcagtcgatcgaccacagtgaagtg
gtcaacctgttgatgatgccagccaacaccgttgagatactcgcacataggaaagctcga
ctacctcgtccatcagctctgcaacagcagcagcaacaacagcaacgaaattcttccttc
aaccagcagcaacaacaacagctgcttaacaacaacaacaacaacaacggcaatgatggt
agtagtaggagaatgaggaatggatcagtcaataattacgacgatgaaaattatttattc
aagccgaaatccaaaacactcctcaacacttcttccacatcttccaagatgggcaacaac
atctcgccaccgttttcaacaacaacaacatcaataacgacaacaacattgtcaaatagt
tttacgagcaacaacagcaacattcagaaattgttgaccatcaacacaagcacaccgccc
tcaatgttctcaacaaaatcaacgacatcagttgtgtcgcccgtcgagattctattcacc
agtagtccgtcctacaacaacccgccaccgacaacaacgtcaatgacgtcatcgtccacg
tcatcatcaacaaccgccgcaagaacgtcatcagcaccatcagcagctgcgacactggcg
acagcctcgctacctctaaaatcagtaaaaaccaacggtagaaatttcgaaaatgacgtc
atcaacaatggcgccgacaacaacacaacgtcacttccgaaggtgccaaaagtgaaaaag
tcatcgaaaaaatcgagaatgaacaagtcaggcgatggtgatgacgatgatgatgatgat
gttgggggtggtcgtaatgatgatgacgtcaccatcgaccaatcaatggaggatttgatc
cttgccgacaacagcgttaaccacggcgagaagaagaagaccaaaaaaaagaaaaaagat
aaacattcagttgaaactatagttattgagaagaatggaggcccattgggtatgagcatc
gtgggaggagttgatcgaatctgtcatccattcggcgtccttgaccctggagtttttatt
tcaaaggtcgtcgagaatggggccgcatctcattataatttgaagattggtgatagaata
ctggctgtcaatggtaatagtttgaaagaggccacccatcacgaagctgtaagctcactg
gttagccccgcctccgaagttacgctattggtccagcacgatccgcccccgcctggattg
caagagataaaactgataaagagagagggcgagaaatttggactgacgataaaaggaggg
gtggataagctgggaggggggaacaagatgggaggtaatccggaagatgacgcagatgaa
ggaatttttatatctaagataaatccaattggtgtcatagcaaaagatagcaggcttaaa
gtgggtcagcgaattcttgaggtcaatggaatcagcttgttgggcgtgacccatgatgac
gccgtccaatcactgaggagtattcagggcgggtttacgttactcgtctgcgacggttac
cagcccaaaagtgaaaaagatgacgaaaagattaacaatcagcccctggaaagattttat
tcgacttccagtgtcgatagattagctggagatagttttgaccagcaaacggtcgtcacc
aaacaattgaagttcggcagcagtccggcgaggcacgcaacgtcatcgtcgtcatcacat
gcagctgcagcaacaactgcaacatcatcatcatttgcaacaaaaccaccacagccctct
tcgtcgtcgtcggcttcatcgtccatgatggtgaagaagaaaaagaagaagattttctca
tcagctgaacatcttcttgtcgatcatgatttggagaacgtgccaacagcggctacagca
gcggcggcagcagctgatgacgctaacgctaacgcgtcgtcatcctcgccgagtaagaga
atcgtgaagaagaaaaaactaaaagtaaaccaatcattcgacacggcaaacgacagcgtc
aacaacaactacggcggcatcaatatggacagcagcttaatcatcagtccgtcgcgcaaa
aaatacgatcatggggatgacggtgacgacgacgacgatgtgattaaggagattaagaag
attaaaggaaggaagaaattattagtttgccggttgaagcgacatcgattgttgatcact
aacacgttggccaatgggtttttgctggctgccggagatttcgtcgttcagcaggtggac
aggtacaacgagaaaaaattaaatccggaatccgtgcgagagtttgttgattggcagaga
acgaaaagattccttatcactggattatgttttggtcccgttcttcatggctggtactca
ctgcttgattggaaattcccaaaggccacaataagatcagttgcatggaaagtcttttat
gatcagaccatcgcctgtccgtgctccatcacttatttcttttttgcaactgggttacaa
gaaggtaaaagatttaaggaatgcgtggcagagttgaaggaaaaatttgttgcggcctat
ttggtggattggttaatatggcctgctgcacaaacgtttaacttttttttcattcctcca
actttcagagtaatatttgtcagctcaacgacatttgtctacagtatatttctatcttac
atcaaaaatattgaattaacttctgaacacaagtggctgtcagctttcaagatagaataa
DBGET
integrated database retrieval system