Helobdella robusta: HELRODRAFT_193079
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Entry
HELRODRAFT_193079 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hro
Helobdella robusta
Pathway
hro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELRODRAFT_193079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_193079
Enzymes [BR:
hro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
HELRODRAFT_193079
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
HELRODRAFT_193079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
20212513
NCBI-ProteinID:
XP_009023768
JGI:
Helro1_193079
UniProt:
T1FUL7
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MEITRENFENDFNLIKSSIERASFITIDTEFTGLDDGSHDYITSFDTPEERYKKLLKPAK
EFLIIQFGISAFIKKSEKYEYEVESYSFYLFPQSSKLLPDVVFSCQSSSLSFLVSRGMDF
GKVINKGVSYISFENEKKLLETLAMKYENNNKNNSTPQQHSQSLTSRGNNLLSPPSTPQS
LTAVPVLQQSFIDRQLKSVESFLSATSSSSLQLTSPVTSPSSSSVTSSTSSSFFADEWMT
LEPCSAFSRKLLYEQLNLRFPDRLYLETIAHRGQGSSSGCLKVVKIQNAEHRKCLEMKKQ
KAEYDELTKAVGFTKVIKLLHQSDKLIIGHNMLLDVMHIIGQFWVDLPLEYESFKTLTHL
LFPSSNSSLESLYTDLKASSKIPKVSIGSVLVSLIDDQSALISLNDKEQSVNVKKQLAAC
RSQWFRLQSYADWYNSSVKNKNNNNNDNNNKLKVAGNDEVQVGSAFKRKFNVDHFNGKKV
NAKKRIKMTAVTSSSSTTTLNKTTAVVMATKPSTTTTSLAPPPPLITSLITSSVSAEPTT
LNVHAMFEIPDWK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggagatcactcgagagaactttgaaaatgatttcaatctgatcaaaagttccattgaa
cgtgcatcattcattacaattgacactgaatttactggcttggatgatggcagccatgat
tacatcaccagttttgatacacccgaggaaagatacaagaaattattaaagccggccaaa
gaattcctaataatacagtttggaataagtgctttcattaaaaagtctgaaaaatatgaa
tacgaggtagagtcctatagcttctatctatttcctcaatcttccaaattgctaccggac
gttgttttctcttgccagagttcctcgctgagctttctggtatcaagaggcatggatttt
gggaaagttataaataaaggtgtttcctacatatcgtttgaaaacgagaaaaaacttctt
gaaacgctggccatgaaatacgagaacaacaacaagaacaacagcaccccgcaacaacac
agccaatcgttgactagtagaggcaataatttgttgtcgccaccgtcaacgccacagtcg
ttaacagccgttcccgtgctacagcaaagttttattgatagacaattgaaaagcgtggag
tcatttctgtcggccacgtcgtcgtcatcgttgcaattgacgtcaccagtgacgtcaccg
tcgtcatcatcggtgacgtcatcaacatcatcgtcattctttgctgatgagtggatgacc
ttagagccatgcagcgcgttctccagaaagttgctctacgaacaactgaacttgcgattc
ccggatcgtctgtatctagagacgatagcgcatagaggtcagggtagcagctctggttgc
ttgaaagtggtcaagattcaaaatgctgagcaccggaagtgtctcgagatgaagaaacaa
aaggccgaatatgacgagttgaccaaagctgtcggcttcacaaaagtcatcaagttactc
catcaatcagataagctaataataggccacaacatgttgctggatgtcatgcatatcatt
ggtcagttctgggtcgatctgccattggagtatgaatcatttaaaactctcactcaccta
ctctttcctagctcaaatagcagtctggaaagtttgtacacggatctcaaagcctcatcg
aaaattcccaaagtttcaattggcagcgtgcttgtcagtctgatagacgaccaatcagct
ctcatcagccttaacgacaaggagcagtcagttaatgtgaagaaacagcttgcagcctgt
agaagccagtggttccgcttgcagtcctacgctgactggtacaacagtagcgttaaaaat
aaaaataataataataatgataataataataaattaaaagtggcgggaaatgacgaggtt
caagtcggaagcgccttcaagaggaagtttaatgttgatcattttaatggtaaaaaagtt
aacgcaaagaagaggatcaaaatgactgcagtgacgtcatcatcgtcgactactacttta
aacaaaacgactgctgtggtaatggcgacaaaaccatcaacaacaacaacatccttagca
cccccgccaccactaataacgtcactgattacgtcatcagtgtcagctgaaccaacgaca
ctaaatgttcatgccatgtttgaaatcccagattggaaatga
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