Helobdella robusta: HELRODRAFT_83915
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Entry
HELRODRAFT_83915 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03015
mRNA surveillance pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_83915
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_83915
03015 mRNA surveillance pathway
HELRODRAFT_83915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_83915
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_83915
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HELRODRAFT_83915
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HELRODRAFT_83915
Spliceosome [BR:
hro03041
]
Complex C
Other components
EJC/TREX
HELRODRAFT_83915
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HELRODRAFT_83915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
SLFN-g3_helicase
UvrD-helicase
AAA_19
Mpt_N
P-loop_SecA
Cas9_PI
Motif
Other DBs
NCBI-GeneID:
20216265
NCBI-ProteinID:
XP_009022037
JGI:
Helro1_83915
UniProt:
T1G5B8
LinkDB
All DBs
Position
Unknown
AA seq
419 aa
AA seq
DB search
MSANVIDVENLCDFDDFEEQVEIFENAKHHDNGNHVSVHSSGFRDFLLKPELLCAISDCG
FEHPSEIQLESIPQAILGLDVVCQGKSGTGKTAIFVLATLQQLEVEDSRVRVLVICHTRE
LAFQISKEYERFSKHMKNVRTAVFIGGRSISKDEETSKQKRPHIVVGTPGRILTLVRSRH
LHLKHLHQFVVDECDKMLNQLDMRKDIQEIFSRTPPHKQVMMFSATFSDETKAICKKFMN
DPVEFYVEEKQLTLKGLQQHFISLHEHQKNRKLIELLDALDYNQVIIFLKSVHRCIFLCE
LLNEQNLPVTAIHRSMKQNERLRLYQRFKNFESRILVTTNLFGRGIDIERVNVVINYDVP
ENADTYLHRVARAGRFDTKGLAVTFLANKSDAEILNEVQEKFEVSISKMPDNTDQALYI
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaatgtgatcgatgttgaaaatctttgcgactttgacgatttcgaagagcag
gttgaaatattcgaaaacgccaaacatcatgacaacggcaaccatgtctccgtccacagt
tctggattcagagacttcctactgaaaccagaactcctttgcgcaatcagcgattgtgga
tttgaacatccatcggagattcaactggaaagtatacctcaagctattcttggcctggat
gtcgtttgccaaggaaagtcaggcacaggcaaaacagctatctttgtcttggcaactcta
cagcagctggaagtggaagacagtagagtaagagttctggtgatctgtcacaccagagaa
ctagcatttcaaattagcaaagagtacgaacgattcagcaaacacatgaaaaacgtacgg
acagctgttttcataggagggagatcgatttccaaagatgaggagacatcgaaacagaaa
cgtcctcacatcgtcgtcggtacgccaggcagaatattgaccctggtaaggagtcgccat
ttacatttgaagcatttacatcagtttgtcgtagatgaatgcgacaaaatgttgaaccag
ttagatatgaggaaagatatccaggaaatcttctctagaactccaccccacaaacaagtc
atgatgttctcggcaacattttccgacgaaactaaagccatctgcaaaaaatttatgaac
gatccagtggagttctatgttgaagaaaaacagttgacgctcaaaggcttacaacaacat
tttatcagcctgcatgaacatcaaaaaaatagaaaactaatagaactgttggatgcactg
gattataaccaagtcatcatctttctgaaatcggttcacagatgcatttttttgtgcgag
ctacttaacgagcaaaaccttccagtaactgcgatacatcgatccatgaagcaaaacgaa
agactgagactctaccagcggtttaaaaacttcgaaagtaggatcttggtgacaacgaac
ttattcggcagaggaattgacatagagcgggtcaacgttgtcatcaactacgacgtgccg
gaaaatgccgacacatatctccacagggtggcccgcgccggcaggttcgacacgaaagga
ttggcagtcacattcctggccaacaaaagcgatgctgaaattttgaacgaagtgcaggag
aaatttgaagtttccatcagtaagatgcctgataacaccgatcaggccctgtacatttga
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integrated database retrieval system
