Helobdella robusta: HELRODRAFT_94766
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Entry
HELRODRAFT_94766 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12856
pre-mRNA-processing factor 8
Organism
hro
Helobdella robusta
Pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_94766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_94766
Spliceosome [BR:
hro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
HELRODRAFT_94766
Complex C
U5 SnRNP specific factors
HELRODRAFT_94766
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
20217577
NCBI-ProteinID:
XP_009020123
JGI:
Helro1_94766
UniProt:
T1G930
LinkDB
All DBs
Position
Unknown
AA seq
2327 aa
AA seq
DB search
MPPLPPGMPHPPPVADYMSEEKLQEKARKWQQLQTKKYAEKRKFGFVDTQKEDMPPEHVR
KIVRDHGDMTSRKFRHDKRVYLGALKYMPHAVLKLMENMPMPWEQIRDVKVLYHITGAIT
FVNEIPWVIEPVYIGQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYTDNILDVEP
LEAIQMDFDPEEDKAVCQWIYEHKPLVDSKFVNGSTYRKWNLSLPQMSTLYRLANQLLTD
LVDENYFYLFDMKSFFTAKALNLAIPGGPKFEPLVKDKEMQDEDWNEFNDINKIIIRQPV
RTEYRIAFPYLYNSMPYQVHLSWYHAPNVVFIKTEDPDLPAFYFDPLINPISQRHSTKKA
EPLPEDDDEFELPVYIQPFLTELPLYTDNTANGIALLWAPRPFNMRSGRCRRAIDVPLVK
TWYREHCPAGMPVKVRVSYQKLLKCFVLNALKRRHPKAQKKRYLFRSFKATKFFQTTTLD
WVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDFNFNLKPVKTLTTKERKKSRFGNAFHLCR
EILRLAKLIIDSHVQYRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYKLMRQIRMCKDL
KHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGV
AKTVTKQRVESHYDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKV
PGLPTPIESMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKSEQ
ERQHNYLKDGPYVTSEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKE
AYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRSFKEVGIEFMDLYSHLVPV
YDVEPLEKITDAYLDQYLWYEADKRRLFPHWIKPADAEPPPLLTYKWCQGINNLQDVWDT
SEGECNVMLESNFEKIYEKIDLTLLNRLLRLIVDHNIADYMSAKHNVAISYKDMNHINSF
GIVRGLQFCSFIVQYYGLVLDLLVLGLQRASEMVGPPQMPNDFLSFRDVQTEISHPIRLY
SRYINKIHIFFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVN
LGRAVFWDIKNRLPRSVTTTQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSHDEFT
HRDGVWNLQNEITKERTAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALI
GLMTYFREAVVSTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGML
SMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIMPWESEFVDSQRVWAE
YALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVL
KQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASG
FEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPT
LKISLIQIFRAHLWQKVHESIVMDLCQVFDQELDALGIETVQKETIHPRKSYKMNSSCAD
ILLFAAYKWGVSRPSLLADSKDTMDNSTTQKYWLDIQLRWGDYDSHDIERYTRAKFLDYT
TDNMSIYPSPTGVLIGLDLAYNLHSAFGNWFPGCKPLIQQCMAKIMKANPALYVLRERVR
KALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIF
IFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGM
LDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKANEPQMYLFNLYDDWLKTIS
SYTAFSRLILILRAMHVNNDRTKMTLKPDRTTITETHHIWPTLNDEDWMKVEVQLKDLIL
ADYGKKNNVNIASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATTTRTVN
KHGDEIITSTTSNYETQTFASKTEWRVRAISATNLHLRTNHIYVSSDDIKETGFTYILPK
NLLKKFIIISDLRAQIAGYLYGVSPHDNPQVKEIRCIVMPPQWGTHQTVHLPNILPTHDH
LKQMEPLGWIHTQPNELPQLSPQDISTHARIMSDNPSWDGEKTVVITCSFTPGSCSLTAY
KLTPSGYEWGRQNKDTGNNPKGYLPSHYEKVQMLLSDRFLGFFMSPVQSSWNFNFMGVHH
DPNMKYEIQLANPKEFYHEIHRPSHFLNFRSLEDGDIVGADREDLFK
NT seq
6984 nt
NT seq
+upstream
nt +downstream
nt
atgcctccacttcctccggggatgccgcaccctcccccagttgccgactacatgtccgaa
gaaaaattgcaagagaaagctcgtaagtggcaacaactgcagacaaaaaagtatgcagag
aagaggaagtttggatttgttgacacccaaaaagaagacatgccacctgagcatgttagg
aagattgtcagagatcatggagacatgactagtaggaagtttagacatgataaaagagtt
tatttaggtgccctgaaatacatgccacatgctgttttgaagttgatggagaacatgcca
atgccatgggagcagatcagagatgtgaaagttttgtaccatatcacaggagccatcacg
ttcgtcaatgagattccatgggtcatcgaacccgtgtacattggacagtggggcacgatg
tggatcatgatgaggagagagaaacgtgacagacgtcatttcaagaggatgaggtttcca
ccgttcgatgacgaggaacccccgcttgactacacagacaacatcctcgatgttgaacca
ctagaagcaatccagatggattttgatcctgaggaagataaggctgtttgtcagtggatc
tatgaacacaaaccactggttgactccaaatttgtgaatggctcgacatatcgcaaatgg
aatttgagtcttcctcagatgtccaccttgtacagactggccaaccagctgctgaccgac
cttgtagatgaaaattatttctatctgttcgacatgaagtcattcttcactgcgaaggct
ctcaaccttgctattcctggagggcccaagtttgagccgcttgttaaagataaggagatg
caggatgaggattggaatgagttcaacgacataaacaagataatcatcagacagcctgtg
aggacagagtacagaattgcattcccatacttgtacaacagcatgccgtaccaggtccat
ctatcatggtaccatgcaccaaatgtggtctttataaagacagaggatcctgatctgcca
gccttctactttgatcctctcatcaatccaatctctcagaggcattcaactaagaaagca
gaaccccttccagaagatgacgatgaatttgagctccctgtgtacatccaacccttccta
actgagctgcccctctacacagacaacacagccaatgggattgctctgttgtgggcccca
cgacctttcaacatgaggtcaggtagatgcaggagagctattgatgttccacttgtcaag
acttggtatcgagagcactgcccggctggcatgcctgtgaaagttcgagtatcttaccag
aaacttttgaaatgttttgtacttaatgctcttaaacgcagacacccgaaagctcagaaa
aagaggtatcttttcagatcattcaaggctacaaaatttttccagacgacaactcttgat
tgggttgaggctggactgcaagtctgcaggcagggctacaacatgctcaatctgctgatc
caccgtaagaatttaaattacctacatcttgacttcaacttcaatttgaaacctgtgaag
acattgacgacaaaggagagaaaaaagtcaaggtttgggaatgctttccatctttgtagg
gagattttgaggctggccaagttgatcatcgacagtcatgtccagtatcgattaggaaac
gttgatgcttttcaactggcagatggattgcagtacatattctcacatgttggccagcta
accggaatgtacagatacaagtacaagctgatgagacagattagaatgtgcaaggacctc
aaacacctcatctactacagattcaacactggtccagttggcaaaggaccgggatgtgga
ttctgggcaccagggtggagggtgtggttgtttttcatgagaggcatcactccactgctc
gaaagatggctgggtaatttgttgagcaggcagtttgaaggcagacactcgaaaggtgtt
gctaagactgtcacaaagcagagagtggagtcacattatgatctcgaactcagagcagct
gtgatgcacgacatcctggacatgatgccggaagggatcaagcagaacaaggcccgtacc
atcctgcaacatctgagtgaggcatggaggtgctggaaggccaacattccctggaaggtg
cccgggcttcccactcccattgagagcatgatattgagatatgttaaggcaaaagctgat
tggtggacaaacacggcccactacaacagagaacgaattaggaggggagccactgtggat
aagacagtctgcaagaagaatctgggcaggctgactaggttatacctgaaatcagagcag
gaaagacaacataactatctgaaggacggaccatatgtaacctcggaagaagcagtagcc
atctacacaacaacagttcactggcttgaaagcagaaggttcagcccaataccattccca
ccactgtcctacaaacacgatactaaactgctcatattggcacttgagaggctcaaggaa
gcatacagcgtgaaaagtcgtctgaaccagtcacagagagaggagttaggtctgattgaa
caagcgtacgacaacccacacgaggccctgtcaagaatcaagaggcatttactcacccag
agatcattcaaagaggtgggcattgagttcatggacctgtacagtcacttggtgccagtt
tatgatgttgagccgctcgagaaaataacagatgcctacttggaccagtacctctggtat
gaggccgacaagaggagactgtttccacactggatcaaaccggcagatgctgagccaccc
cctctgcttacgtacaagtggtgccagggaatcaacaacctgcaagatgtctgggacact
tctgaaggagaatgtaatgtaatgctggagtcgaacttcgagaagatatatgaaaagatc
gatcttacattattgaatcgactgctgaggttgatagttgaccacaacattgcagattac
atgtctgctaagcataatgttgccatttcttacaaggacatgaaccacataaactcgttt
ggaatagtgaggggccttcaattctgttccttcattgttcagtactacggcctggttctt
gacctacttgtattgggcctgcagagagccagcgaaatggtcggaccccctcaaatgcct
aacgatttcctaagttttagggatgtgcaaactgaaatatcacatccaattagactctat
tcaagatacatcaacaagatacatatattctttagattcacggcagaggaggcacgtgat
ctgatccaaagatacttaacagagcatcctgatcccaacaatgagaacattgtcggctac
aacaacaagaagtgctggcctagggactccagaatgagactcatgaagcatgacgtcaat
ttaggacgtgcagtgttctgggacataaagaaccgcctgccacgctctgtaacaacgacg
caatgggagaacagttttgtttcagtgtacagcaaggacaatcccaacctgctgttcaac
atgtgtggctttgaatgcaggatcctgccaaagtgtaggacgtcacatgatgagttcaca
cacagggatggtgtctggaatcttcaaaatgagataactaaggagaggacagctcagtgt
ttcttgagagtagatgatgaatcattgcagaggtttcataatcgcgtcaggcagatcctc
atggcttctggctcaaccactttcaccaagatagtgaacaaatggaacacggcattaatt
gggctgatgacctacttccgagaggcagtggtcagcacccaggagctccttgacctgctc
gtcaaatgcgagaacaagatacaaactcgtatcaagattggcctcaattcaaaaatgcca
agcaggtttccaccggtagtcttctacactccaaaagaattaggaggattgggaatgttg
tcgatgggacatgtgcttataccacagtctgatctcaggtggtcaaaacagacagacgta
ggcatcactcacttccgatcagggatgtcacatgatgaagatcagctcatccctaattta
tacaggtacatcatgccgtgggagagtgagtttgtagattcacagcgtgtctgggcggag
tatgcactgaagaggcaggaggccaacgcccagaacaggaggttgacactggaggacctg
gaggacagctgggacaggggcattccaaggattaacacactctttcaaaaggaccgacac
acactggcttacgacaaaggatggagagttaggacggatttcaagcagtaccaggttctg
aagcagaatccattctggtggacccaccaacgacacgatggtaaactgtggaacctgaac
aactacagaaccgacatgatccaggcattaggaggcgtcgagggcatcctggaacatacc
ctcttcaagggaacgtacttcccgacttgggaaggtctattctgggagaaggccagtgga
tttgaggaatctatgaagttcaagaagctgacaaatgcacagaggtccggtttgaatcaa
atcccaaacaggagattcacattgtggtggtcgccgaccataaacagagcgaatgtgtac
gtcggcttccaggtgcagctcgatcttactggaatcttcatgcacgggaagataccgact
ctgaagatatctctcatacagatattcagggctcacttgtggcagaaggttcacgagagt
attgtcatggatctgtgccaggtgttcgaccaggagctggatgctctgggtatcgaaacg
gtacaaaaggaaaccatccatccgaggaagtcttacaaaatgaacagttcatgtgcagac
atccttctgttcgctgcctacaagtggggagtctccaggccatctctactggccgactca
aaagacacgatggacaactcgacaactcagaagtattggttggacatccagttgaggtgg
ggagattatgactcgcacgacatcgagcgttacacgagagcaaagttcctcgactacaca
actgacaacatgagcatatatccatctccaaccggggtcctcataggacttgatcttgct
tataatcttcacagtgcattcggcaattggttcccaggctgcaaacctctgatccaacaa
tgcatggcaaagataatgaaggccaatccagctctgtatgtgttgagagaacgagttagg
aaagccttgcaactttacagctcagaaccaactgaaccgtatctatcgtcacagaattat
ggagagctcttctcaaatcaaatcatctggttcgtcgatgacaccaacgtgtacagagta
accattcataagacatttgaaggcaacttgacaacaaagcctataaacggagccatcttc
atcttcaatcctcgaactggacaactcttcctcaaaatcatccacacgtcagtttgggcc
ggtcagaaacgtcttgggcagcttgccaagtggaaaacagcagaggaggtagcagcattg
atccgatcgctgcctgtagaggagcagcctaagcagatcattgtgaccaggaagggaatg
ttggacccactcgaagtccatctccttgatttccccaacatcgtcatcaagggcagcgaa
cttcaactgcccttccaagcctgcctcaaagttgaaaaatttggggatctgattttgaaa
gccaatgaacctcagatgtacctcttcaatctttacgatgattggctcaaaactatttct
tcttataccgctttctcacgattgatcttaatattgcgggccatgcacgtcaacaacgat
cgaacgaagatgactctgaagcctgataggacgaccataacggagacacatcacatctgg
cccaccttgaatgatgaggattggatgaaagttgaagtgcaactgaaagatctcatcttg
gctgactatgggaaaaaaaataatgtgaacatcgcctctctgactcagtccgagataaga
gacatcattttgggcatggaaatatctgctccctcccaacagagacagcagattgcagaa
atcgagaagcagaccaaagaacaatcacaactgactgccacaactaccaggactgtgaac
aagcatggagatgaaatcattacatcaaccactagtaattatgagacacagacatttgct
tcaaaaactgaatggcgcgtgcgagcaatttcagctacgaacctgcacttgcgtacgaac
cacatctacgtttcatcggacgacatcaaggaaaccggcttcacgtacatcctgcctaaa
aatcttctcaaaaagtttatcatcatctctgatttgagagctcaaattgctggctatctc
tacggagtcagtcctcatgacaatccccaagttaaggaaattaggtgcatagtgatgcca
ccacagtggggcacccatcagacagtccatctgcccaacattcttcccacccacgaccac
ctgaaacaaatggagccacttgggtggattcacacccagcccaacgaactccctcaactt
tcaccgcaggacatcagcactcacgcccgcatcatgtccgacaacccgagttgggatggt
gagaagactgtagtcatcacgtgcagtttcacgccaggctcatgttcactgacagcctac
aaactgactcccagtggctacgaatggggcaggcagaacaaagataccggtaataatcct
aaaggttatttgccgtcccactacgaaaaggttcaaatgttgttgtcggatcgtttcctc
ggtttcttcatgtcccccgtccaatcgtcctggaatttcaacttcatgggggtgcaccac
gacccgaacatgaagtatgaaattcagttggccaatccgaaagagttctaccacgagata
cacaggccatcccacttcttgaacttcagaagtttagaggatggagacatagtgggggcc
gacagggaggacctcttcaaataa
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integrated database retrieval system