Helobdella robusta: HELRODRAFT_96072
Help
Entry
HELRODRAFT_96072 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hro
Helobdella robusta
Pathway
hro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELRODRAFT_96072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_96072
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_96072
03009 Ribosome biogenesis [BR:
hro03009
]
HELRODRAFT_96072
03016 Transfer RNA biogenesis [BR:
hro03016
]
HELRODRAFT_96072
Enzymes [BR:
hro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HELRODRAFT_96072
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
HELRODRAFT_96072
Spliceosome [BR:
hro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
HELRODRAFT_96072
Complex C
U4/U6.U5 tri-SnRNP related factors
HELRODRAFT_96072
Ribosome biogenesis [BR:
hro03009
]
Eukaryotic type
Pre-60S particles
Helicases
HELRODRAFT_96072
Transfer RNA biogenesis [BR:
hro03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
HELRODRAFT_96072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
20217648
NCBI-ProteinID:
XP_009029080
JGI:
Helro1_96072
UniProt:
T1G9A1
LinkDB
All DBs
Position
Unknown
AA seq
955 aa
AA seq
DB search
MPRIQIHRLETLEACTHEVAVPPGITYQPLSLAPDHKPVMEYKFILDPFQKEAILCLENN
QSVLVSAHTSAGKTVIALYAVALSLKNKQRVIYTTPIKALSNQKYRELYVEFKDVGLMTG
DVTINPDASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEESIILLP
DNVHYVFLSATIPNARQFAEWISYLHKQPCHVVYTEYRPTPLQHYIFPAGGDGIHLVVDE
KGNFREDNFNTAMSILRDSGDASKGDQKGRKGGIKGCESNCFKIVKMIMNKNFAPIIIFS
FSKKDCEAYALQLSKLDFNDDHEKKLVQLIFNNAIDTLSDEDRKLPQIEHVLPLLLKGIG
IHHSGLLPILKEVIEIIFAEGLIKALCATETFAMGLNMPARTVLFTNARKFDGKDFRWIS
SGEYIQMSGRAGRRGLDDKGIVILMLDEKISPEIGKQILKGQPDPLNSAFHLKYNMVLNM
LRVEDINPEYMLERSFYQFQNYESIPAIVEKMKRAEELYKCMEFAEEEKVASYYRIKRPL
QKLNLEMISYMQKPQYILPFLQPGRLVKVVSEGVDFGWGVVVNFRRKANQTAKASAVEGG
PPAEVMYVVDVLLQVSRDSIRPNDVNSIRPCSSNEKAEMQVVPMNLQVISPISSIRIYMP
KDLVHVDARMSVLAALKTVLKKFPDGLPLLDPIEDMGIRDDSFIQLVKRIKDFEDRLKNH
VIHNSEQVLQLCSKFEEKEKLLQDMKDMKRELKEKKSLLQMVELKKRKRVLRRLKYTDAS
DVIEVKGRVACLINGADELVATELLFDGVFNNLTAQETCALLSCFAFQEKCSEIPKLSEK
LLGLFRKLQDTARMVAKVSDEVRLNVDEDEYVDSFKPNMMNVVYAWANGESFARICQMSE
IFEGSIIRCMRRLEECLRQMFLAARSIGSAELEKKFAEGTRLIKRDIIFADSLYL
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcatacaaattcacagactagagacactggaggcatgcacccatgaagttgca
gtcccaccgggcatcacatatcaacccctctcactggcacctgaccacaaacctgtcatg
gagtacaaatttattctggatccttttcagaaggaggccatcttgtgtttggaaaataac
cagtcggtgcttgtgtctgcccatacatctgctggcaaaacagttattgcattatatgca
gttgcactgtcgctgaagaacaaacaacgagtgatatacacgacgcccatcaaggcactg
agcaaccagaagtacagggagctctacgtagagttcaaggatgtcgggctcatgactgga
gatgtcaccatcaaccccgatgctagctgcctcgtcatgaccactgagatccttagaagc
atgctgtacagaggttcggaaattatgagggaagtggcctgggtcatctttgatgaaatc
cattacatgcgtgacaaagagcggggtgttgtgtgggaggagtcgatcatactgctgccg
gacaatgttcactacgtcttcctttctgctaccatccccaacgccaggcagttcgccgag
tggatatcctacctccataagcagccctgccacgtggtgtacacagagtatcgaccaacc
ccactgcagcattacatatttccagctggtggagacggcattcacctggtcgtcgatgag
aagggaaatttccgtgaagacaacttcaacacagccatgtcgatcttgagggactcgggc
gatgcaagcaagggtgatcagaagggcaggaagggaggcatcaaaggttgcgaatccaac
tgcttcaagatcgtgaagatgattatgaacaagaactttgcaccgatcatcatattcagc
ttcagcaagaaggactgtgaggcctatgctctacagctctcaaagttggattttaatgat
gatcatgagaagaagttggttcagttgatcttcaacaatgcaattgacactctctccgat
gaagacagaaagttgcctcagatcgaacacgtgcttcccttgttgttgaagggcattggc
atccatcattctggattgcttcctattcttaaagaagtcatcgaaattatttttgcggag
ggactcattaaggctctgtgtgccacggaaacgtttgcgatgggtctcaatatgccggcc
cgaacagtcctcttcacaaatgcccgcaagtttgatggcaaggacttcagatggatatca
tcgggcgagtacatccagatgagtggacgggcaggcaggagaggtctcgacgacaagggg
atcgtcatcctcatgctagatgagaagatcagtcctgaaattggcaagcagatcctcaag
ggccagcctgacccactgaacagtgctttccacttgaagtacaacatggtcctgaacatg
ttgcgcgttgaagacatcaaccccgagtacatgctcgagaggtcattctatcagttccag
aactacgagtccatacctgccattgttgaaaagatgaagagggccgaggaattgtacaaa
tgcatggagttcgcagaggaggagaaggtggcttcctactatcgcatcaaacgacctctg
cagaaactgaacctcgaaatgatcagctacatgcagaaacctcagtacatcctgccgttt
cttcaacctgggaggcttgtcaaggtggtcagtgaaggtgtggactttggatggggagtt
gtggtcaactttaggaggaaagccaaccagactgcaaaggcatcggcagtggagggtggg
ccgcctgctgaagtcatgtacgtcgtcgacgtcctcctccaggtcagcagggactccatc
aggccaaatgacgtcaacagcatccgaccgtgcagcagcaacgagaaggcagagatgcag
gtagtgccaatgaatctgcaagtgatatcaccaataagctccattcgtatttacatgcct
aaagatctggtgcacgtggatgctcgcatgtctgttctggctgctctcaagactgtgttg
aagaagtttccggacggtttgccactgctcgatcccatcgaggacatgggcatccgggac
gacagcttcatacaacttgttaagagaattaaagattttgaggaccgactgaagaaccat
gtgatacacaacagcgaacaagtgttgcaactttgttcgaagtttgaagagaaggaaaag
ttgttgcaagatatgaaagatatgaagagagagttgaaggagaagaagtccttgctgcag
atggtggagttgaagaaaaggaaacgtgtgttacgcaggttgaagtacacagacgcttct
gatgtcattgaggtcaagggtcgagtggcttgtctcatcaatggtgcagatgagttggtg
gcaacggagctgttgtttgacggagtgttcaacaacctgactgcccaggagacctgtgct
cttctcagctgttttgcctttcaagagaagtgctctgagatacccaagttgagtgaaaag
ctgcttggtctatttaggaagttacaggacacagccaggatggtagcgaaggtgagtgat
gaagtgaggctgaacgtggatgaagacgaatacgtggactccttcaagccaaacatgatg
aacgtcgtatatgcgtgggctaacggggaatcgtttgcacgaatctgtcagatgtccgaa
atttttgaaggtagcattatcaggtgcatgagacggttggaggagtgtttgagacaaatg
ttcctagccgccaggtccataggaagtgctgaactggaaaaaaaattcgcggaaggtacc
cgcctgatcaagagggacatcatatttgcggacagtctctatttatga
DBGET
integrated database retrieval system
