Helobdella robusta: HELRODRAFT_96415
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Entry
HELRODRAFT_96415 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K14409
protein SMG7
Organism
hro
Helobdella robusta
Pathway
hro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HELRODRAFT_96415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_96415
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
HELRODRAFT_96415
mRNA cycle factors
Common to processing body (P body) and stress granule
HELRODRAFT_96415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Zf-C2H2_ZNF451
Novirhabdo_Nv
Motif
Other DBs
NCBI-GeneID:
20217666
NCBI-ProteinID:
XP_009030567
JGI:
Helro1_96415
UniProt:
T1G9B9
LinkDB
All DBs
Position
Unknown
AA seq
518 aa
AA seq
DB search
MSSIDLFKQAENLKLACNDTTKGPNEVWKSRQLLQEIYQTLLTTDLEFALDKKVEQDLWK
YTFKKQISSLQCQGKDNKQGNLRKGEVQAGLNLFLKAASGFYLQLLQELTCWWKMDTPFN
KQPYCIGIIKEYPPIRTSKKFAHLNSYMYICQDCLVHLGDISRYRDLIDQAQFYYKHAAR
LAPFNGQPYNQLAILEVQRGNKLSAVFYHMRGLALIHPFPVSEVNLMKFFNKISKDSYES
RQKLASNEWISFFLQFHATIFLNLDLNKSEIRLNKILSTFNNNLESTSGFSGLQLIQICA
INFYQCYCLAKRVATKSNDKKNAFNINQSGDSKKVSDVTGRSGCETDVTGRSGCQDHLVG
NDGDESRTLKVLLSEDARGCSGSTDGEVRSNRWGLEGEVEDMIDDSFVFDEVRNIPHHGD
HLDSTAHKERCVDARDVQYKKQLIMVTDLTVAILNQMLEKCCEAATTNEQNGCSEFNDFA
LETVFPSVKSCLEWLVINLEMLHDCTNVQTVGLWSANC
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccatcgatttattcaaacaagcagaaaatttaaaactagcatgcaatgataca
actaaaggaccaaatgaagtttggaaatcaaggcagctactccaggaaatctatcagact
ctcctaactacagatttagaatttgccttggataaaaaagttgaacaagacttatggaag
tatacattcaagaagcagatttcatcattgcaatgtcagggcaaggataacaagcaaggg
aatttaaggaagggtgaagtacaagcaggtttgaacttgttcctcaaggcagccagtgga
ttttatttgcagttgttgcaggagttgacatgttggtggaagatggacactccattcaac
aagcagccatactgcattggcatcataaaagagtacccaccaataaggactagtaagaag
tttgcccacctcaattcctacatgtacatttgtcaggattgtttggtccatcttggagac
atctcgaggtacagggacttgattgaccaggcccagttctactacaaacatgctgctaga
ttggcgcccttcaatggccagccgtacaatcagttggccatcttggaggttcaacgcggc
aacaagctgtcggctgttttctatcacatgagaggtcttgcccttatacatccatttcct
gtttcagaggtcaacctgatgaagttcttcaacaaaatatcaaaggacagctacgaaagc
aggcagaagctggccagcaacgagtggatttccttctttctgcagttccacgcaacgatt
tttcttaatttggatttgaacaaatcagagattcgactgaataaaattctctcaacattc
aacaacaacctcgaatcaacatcgggattctcaggcctgcaactcattcagatatgtgcc
atcaacttctaccaatgttactgcctggcaaagagggtagcaacaaaatctaacgataag
aagaatgcattcaacattaaccaatcaggtgacagcaagaaggtaagcgatgtcactgga
aggtctggttgcgagaccgatgtcactggaagatctggttgccaggatcatctcgttggc
aatgacggagatgaaagcagaactttgaaagttttgctctctgaggatgcacgaggctgt
agtggaagcactgatggtgaagtcagaagtaaccgttggggtctggaaggagaggtggag
gacatgattgatgacagttttgtttttgatgaggtacgaaacattcctcaccatggtgat
catttagattcaactgcgcataaggaacgttgtgttgatgcgagagatgtgcagtacaaa
aagcagttgatcatggtgacggatttgacagttgcaatattgaatcaaatgctcgagaag
tgctgtgaagctgcaactacaaatgaacagaatggctgcagtgaattcaacgacttcgca
cttgaaacagtttttccctctgttaagtcgtgtcttgaatggctggtcatcaaccttgaa
atgttgcacgactgcaccaacgtgcagactgttggactctggtctgcaaactgttga
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