Halosimplex rubrum: HZS55_06990
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Entry
HZS55_06990 CDS
T06687
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hrr
Halosimplex rubrum
Brite
KEGG Orthology (KO) [BR:
hrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrr03016
]
HZS55_06990 (thpR)
Enzymes [BR:
hrr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HZS55_06990 (thpR)
Transfer RNA biogenesis [BR:
hrr03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HZS55_06990 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
QLH77055
UniProt:
A0A7D5T5M2
LinkDB
All DBs
Position
complement(1418911..1419468)
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AA seq
185 aa
AA seq
DB search
MGKRLFVAVDLDGLADEVAAVQKRFAGASGLNFVDPEGAHVTLKFLGDTDPGRVDALVDE
LAAAVDDAGVDPFEYEFGGLGVFPTLDYISVVWVGTRSGGEELTRLHEGVEARTTAMGFD
AEDHEFTPHVTIARMDHAGGKELVRETVREGHPDAGRLAVEEVRLKESVLGPDGPTYDTV
ERFPL
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcgactgttcgtcgccgtcgacctcgacgggctcgccgacgaggtggcggcc
gtccagaagcggttcgcgggggcgtcggggctgaacttcgtcgaccccgagggggctcac
gtcacgctgaagtttctcggcgacaccgaccccgggcgggtcgacgcgctcgtcgacgaa
ctcgccgcggcggtcgacgacgccggcgtcgaccccttcgagtacgagttcggcggcctg
ggcgtcttcccgactctcgactacatcagcgtggtctgggtcgggacgcgttcggggggc
gaagagctgacgcgcctgcacgagggcgtcgaggcgcggacgacggcgatggggttcgac
gccgaagaccacgagttcacgccccacgtcacgatagcccggatggaccacgccggcggg
aaagagctggtccgggagacggtccgcgagggccaccccgacgcgggacggctcgcggtc
gaggaggtccggctgaaagagagcgtgctggggcccgacgggccgacgtacgacaccgtc
gagcggttcccgctgtag
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