Halosimplex rubrum: HZS55_07470
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Entry
HZS55_07470 CDS
T06687
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hrr
Halosimplex rubrum
Pathway
hrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZS55_07470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrr03019
]
HZS55_07470
03016 Transfer RNA biogenesis [BR:
hrr03016
]
HZS55_07470
Enzymes [BR:
hrr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HZS55_07470
Messenger RNA biogenesis [BR:
hrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HZS55_07470
Transfer RNA biogenesis [BR:
hrr03016
]
Prokaryotic type
tRNA degradation factors
HZS55_07470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QLH77143
UniProt:
A0A7D5NZB3
LinkDB
All DBs
Position
1512508..1513824
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AA seq
438 aa
AA seq
DB search
MTTEDEQAQAGTVEGQGPVEIDEEMARHLENKREELFEKFEIRDEFPAEVMREAEQRTEG
VQAEIEEEVDERRDLRDMTTWTTDPIDAQDFDDAISVEKRDDEYVLWVHIADVTHYVNPD
TAMWEEAVERGNTVYLPDYTIHMLPPILAETVCSLVPNEDRLAHTVEMHLDPETLSYEDI
DIYKSVIESDARLTYSEAEEILDDPASADDLLEDTEVDLAEKTELVWELADRMHEQRKED
GSLVLNPARDRAHTIIEECMLKANKAVTHELMWDRGVEAMYRVHPQPSPDEWDEALREIQ
DLDGVSIPGDKWDDPRKAVNATLEEAPGRQLNKIQRAVMFVMPRAKYMSDPFGGHHALNF
EIYGHFTSPIRRLSDLINHWIVATNDVPEDLQALCKHASDQQKDGEQCEREYKQFLEEVG
LDAHAVNNRGIEVIDEEE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgaagacgagcaggcccaggccggcacggtcgagggccagggccccgtcgag
atcgacgaggagatggcccgccatctcgagaacaagcgcgaggagctgttcgagaagttc
gagatccgcgacgagttccccgcggaagtgatgcgcgaggccgaacaacgcacagagggc
gtccaggcggagatcgaggaggaagtcgacgaacggcgcgacctgcgggacatgacgacc
tggacgaccgacccgatcgacgcccaggacttcgacgacgccatctccgtcgagaaacgg
gacgacgagtacgtcctctgggtccacatcgccgacgtgacccactacgtcaaccccgac
accgcgatgtgggaggaggccgtcgagcggggcaacaccgtctatctccccgactacacc
atccacatgctgccgccgatcctcgccgaaaccgtgtgctcgctggtccccaacgaggac
cggctggcccacaccgtcgagatgcacctcgaccccgagaccctctcctacgaggacatc
gacatctacaaatcggtcatcgagtcggacgcgcggctcacctactccgaggccgaggag
atcctcgacgaccccgcgagcgccgacgacctgctcgaagacaccgaggtagacctggcc
gagaagaccgaactcgtctgggagctggccgaccggatgcacgagcagcgcaaggaggac
gggtcgctcgtgctcaacccggcccgcgaccgcgcccacaccatcatcgaggagtgcatg
ctcaaggccaacaaggccgtcacgcacgaactcatgtgggaccgcggggtcgaagcgatg
taccgcgtccacccccagccctcccccgacgagtgggacgaggcgctccgggagatccag
gatctggacggcgtgtcgatccccggcgacaagtgggacgacccgcgcaaggccgtcaac
gcgacgctcgaagaggcccccggtcgccagctgaacaagatccagcgggccgtgatgttc
gtgatgccccgcgcgaagtacatgagcgaccccttcggcggccaccacgcgctgaacttc
gagatctacggccacttcacctcgcccatccgacggctgtcggacctgatcaaccactgg
atcgtcgccaccaacgacgtgcccgaggacctccaggcgctgtgcaagcacgcctccgac
cagcagaaggacggcgagcagtgcgaacgcgagtacaagcagttcctcgaagaggtcggt
ctcgacgcccacgccgtcaacaaccgcggcatcgaagtgatcgacgaggaggagtag
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