Halosimplex rubrum: HZS55_10050
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Entry
HZS55_10050 CDS
T06687
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hrr
Halosimplex rubrum
Pathway
hrr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hrr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HZS55_10050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrr03021
]
HZS55_10050
Transcription machinery [BR:
hrr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HZS55_10050
Prokaryotic type
Archaeal type
TFB
HZS55_10050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Sigma70_r4
DUF8122
Trm112p
DZR
Zn_ribbon_Nudix
HTH_Tnp_ISL3
Cyclin_N
BRF2-like_C_cyclin_rpt
HTH_24
DZR_2
Zn_ribbon_double
Cas12f1-like_TNB
A2L_zn_ribbon
DUF8054_C
TrmB
Zn_ribbon_tTFIIB
Zn_ribbon_LysW
DUF7575
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
QLH77619
UniProt:
A0A7D5PAG7
LinkDB
All DBs
Position
2021442..2022419
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AA seq
325 aa
AA seq
DB search
MSDTTIRTGAEEQTRERLQDENEQESTDVQVCPECGGRVEADTEHGETVCSECGLVVEED
EIDRGPEWRAFNPSEKDEKSRVGAPTTNMMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQ
RLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPKTVRETASVIYRRALEENLLPGRS
IEGVATSALYAAARQANTPRSLDEMTAVSRVEKMELTRTYRYVVRELNLEIKPADPESYL
PRFVSDLALSDDTERRARELIESARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEVS
EVANISEVTIRNRYKELLESVDAPA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgacaattcgaaccggcgccgaggaacagaccagagaacgactgcaggac
gagaacgagcaggaatcgaccgacgtacaggtctgtcccgagtgtggcggtcgggtcgag
gcggacaccgagcacggcgagaccgtctgttcggagtgcggactggtcgtcgaagaggac
gagatcgaccgcggccccgagtggcgggcgttcaacccctccgagaaggacgagaagtcc
cgcgtcggcgcaccgacgacgaacatgatgcacgacaagggtctctcgaccaacatcggc
tggcagaacaaggacgcctacggcaactccctgtcgtcgaaccagcgccagaagatgcag
cgcctgcgcacctggaacgagcggttccgcacgcgcgactccaaggaacgcaacctcaag
caggcgctgggcgagatcgaccgcatggcctcggccctgggcctgccgaagacggtccgc
gagacggcgtcggtcatctaccgccgcgcgctggaggagaacctcctgccgggccgctcc
atcgagggcgtcgccacgtcggcgctgtacgccgccgcgcggcaggccaacacgccccgc
agcctcgacgagatgaccgccgtctcccgcgtcgagaagatggagctcacccggacgtac
cgctacgtcgtccgcgagctgaacctggagatcaagccggccgaccccgagagctacctc
ccgcggttcgtctcggacctcgcgctcagcgacgacaccgagcgccgggcgcgcgaactc
atcgagagcgcgcgcgaccaggggatcctcagcgggaagagcccggtcggcctcgccgcc
gccgcggtgtacgccgccgccctgctgaccaacgagaaggtcacccagagcgaggtcagc
gaggtggccaacatctccgaggtcaccatccgcaaccgctacaaggagctcctcgaatcc
gtcgacgcgccggcctga
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