Halosimplex rubrum: HZS55_12280
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Entry
HZS55_12280 CDS
T06687
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hrr
Halosimplex rubrum
Pathway
hrr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hrr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HZS55_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrr03021
]
HZS55_12280
Transcription machinery [BR:
hrr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HZS55_12280
Prokaryotic type
Archaeal type
TFB
HZS55_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Sigma70_r4
Cyclin_C
Zn_ribbon_3
DZR
BRF2-like_C_cyclin_rpt
HTH_Tnp_ISL3
DUF8106
DZR_2
Cyclin_N
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QLH78027
UniProt:
A0A7D5SQU5
LinkDB
All DBs
Position
2471592..2472566
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AA seq
324 aa
AA seq
DB search
MTDTTIRRHTSEREEARERDEGESETLVCPECGGNLASDAEHGETVCEECGLVVEEDEID
PGPEWRAFDANEKDEKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLR
TWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEG
VATSALYAAARQAGTPRSLDEIAAVSRVDKDEIARTYRYVVRELSLEIQPADPESYVPRF
VSDLDLPDEVERRARQLLNTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSEVA
NISEVTIRNRYHELLEAEEEFTAP
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccactatcagacgccacacgagcgagcgcgaagaggcccgcgagcgagac
gagggggagtccgagacgctcgtctgtccggaatgtgggggcaacctcgcgtcggacgcg
gagcacggcgagacggtctgcgaggagtgcggcctcgtcgtcgaggaggacgagatcgac
cccggtccggagtggcgcgccttcgacgccaacgagaaagacgagaaatcgcgcgtcggc
gcgccgacgacgaacatgatgcacgacaagggtctctcgaccaacatcggctggcaggac
aaggacgcctacggtaactccctgtcctcgcgccagcgcgagaagatgcagcggctgcgc
acatggaacgagcggttccgcacacgcgactccaaggagcgcaacctcaagcaggcgctg
ggcgagatcgaccgcatggcttcggccctggggctgcccgagaacgtccgcgagaccgcc
tccgtgatctaccgccgcgcgctcgacgaggacctgctcccaggtcgctccatcgagggc
gtggccacgtcggcgctgtacgccgccgcccgccaggccggcaccccgcgcagcctcgac
gagatcgcggcggtctcccgggtcgacaaggacgagatcgcacgcacctaccgctacgtg
gttcgcgagctgtcgctggagatccagcccgccgaccccgagagctacgtgccccggttc
gtctccgacctggacctgcccgacgaggtcgagcgccgggcgcgccagctactgaacacg
gccaaagagcagggggtccactccgggaagtccccggtcggcctcgccgccgccgcggtg
tacgccgcctccctgctcgccaacgagaaggtcacccagagcgaggtcagcgaagtcgcc
aacatctccgaagtgaccatccgaaaccgctaccacgagctcctcgaagccgaagaggag
ttcaccgctccctga
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