Halosimplex rubrum: HZS55_12460
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Entry
HZS55_12460 CDS
T06687
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hrr
Halosimplex rubrum
Pathway
hrr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HZS55_12460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrr03019
]
HZS55_12460
03009 Ribosome biogenesis [BR:
hrr03009
]
HZS55_12460
04131 Membrane trafficking [BR:
hrr04131
]
HZS55_12460
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrr04147
]
HZS55_12460
Messenger RNA biogenesis [BR:
hrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HZS55_12460
Ribosome biogenesis [BR:
hrr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HZS55_12460
Membrane trafficking [BR:
hrr04131
]
SNARE
SNARE associated proteins
Others
HZS55_12460
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HZS55_12460
Exosome [BR:
hrr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HZS55_12460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
RuvB_N
AAA_16
AAA_5
AAA_22
TIP49
AAA_2
AAA_33
AAA_14
NPHP3_N
nSTAND3
RNA_helicase
AAA_28
IstB_IS21
AAA_7
Mg_chelatase
ABC_tran
NB-ARC
AAA_17
AAA_3
AAA_18
Sigma54_activat
ATPase
Parvo_NS1
DUF815
TsaE
AAA_30
nSTAND_NTPase5
AAA_11
AAA_24
SLFN-g3_helicase
PhoH
NACHT
Vps4_C
Motif
Other DBs
NCBI-ProteinID:
QLH78062
UniProt:
A0A7D5P5S1
LinkDB
All DBs
Position
2510835..2513060
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGSEVTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVEIRKADAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLQSEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEV
GREEILQIHTRGMPLSDDVTLGRLADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIIKREDFRGALNEVSPSAMREVLVELPKVSWDDVGGLEEAKGKVQESVEW
PLNKPEKFQRMGIDPPSGVLLYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGES
EKAIRQTFRKAKQVAPTVIFFDELDSLAPGRGGDVGSNVSERVVNQLLTELDGLEDMEDV
MVIGATNRPDMIDPALIRSGRFDRLVMIGEPDVEGREQILRIHTEDQPLSADVSLREMAE
ITEGFVGSDLESIGREAAIEALREDDDAEIVDMRHFRQAMENVRPTITDDIRDYYEQMEE
EFKSGGQSRQGPRSGGRIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtgcaactagaagtggcgaaagcgtacccgaacgactcggggcgcggcatc
gcccggctggatcccgacacgctcctccacctcaagctctctcccggcgacatcatcgag
atcgagggcagcgaggtgaccgccgcgaaggtctggcgcgcggaccgccaggactggaac
accgacaccgtccgcatcgacggcttcacgcgacagaacgccgatgtcggcatcggcgag
cgcgtcgagatccgcaaggccgacgccgagaaggccgacaagctcgtcctcgcgccgccc
gaggaagcgagcgtgcagttcggctccgacgccgccggcatggtcaagcggcagatcctc
aagcggccggtcgtcgagcgcgacatcgtcccggtgatgtcctcgacgaaccacccgttc
atgcgctcgcccggccaggcgatcccgctgatcgccgtcgagaccgaaccggagggcgtc
tgtctcatcaccgaggacaccgaggtcgagctccgcgaggaacccatctccggcttcgag
aagaccggcggcgggatcacctacgaggacatcggcggtctccagtcggagatccagcgc
gtccgggagatggtcgaactcccgatgaaacacccccagatattcaagaaactcgggatc
gagccgccccagggggtcctgctgcacggcccgcccggcaccgggaagacgctgctggcc
aaggccgtcgccaacgagacctccgcgagtttcttctctatcgccggtccggagatcatc
tccaagtactacggggaatcggaacagcagttacgtgagatcttcgaggacgccagcgag
gaatccccctctatcatcttcatcgacgagctggactccatcgcccccaagcgcgaggac
gtgaccggtgaggtcgaacgccgcgtcgtcgcccagctgctgacgatgatggacggcctc
gagtcccggggccaggtcatcgtcatcgccgccacgaaccgcgtcgattcggtcgacccc
gcgctccgtcgcccgggtcggttcgaccgcgagatcgagatcggcgtccccgacgaggtc
ggtcgcgaggagatcctccagatccacacccgcggcatgccgctgtcggacgacgtgacg
ctcggtcggctggccgacgagacccacggcttcgtcggcgccgacatcgagagcctcacg
aaggaggccgcgatgaaggccctgcgccggtacctccccgagatcgatctggacgaggag
gacatcccgccgagtctcatcgaccggatgatcatcaagcgcgaggacttccgcggcgcc
ctgaacgaggtgagtccgagcgcgatgcgggaggtcctcgtcgagttgccgaaggtctcc
tgggacgacgtcggcggcctcgaagaggccaagggcaaggtccaggagtccgtcgagtgg
ccgctgaacaagcccgagaagttccagcggatgggcatcgacccgccgtcgggcgtcctg
ctgtacggcccgcccggcaccgggaagacgctgatggccaaggccgtcgccaacgagacc
gacgccaacttcatcagcgtgcgcggcccgcaactgctgtcgaagtgggtcggcgaatcg
gagaaggccatccgccagacgttccgcaaggcgaagcaggtcgccccgacggtgatcttc
ttcgacgagctggactcgctggcgcccggccgcggcggcgacgtgggcagtaacgtctcc
gaacgggtcgtcaaccagctgttgaccgaactcgacgggctggaggacatggaggacgtg
atggtcatcggcgcgaccaaccgcccggacatgatcgaccccgcgctcatccgctccggt
cggttcgaccgcctcgtgatgatcggcgagcccgacgtcgaaggtcgcgagcagatcctc
cgcatccacacggaggaccagccgctcagcgccgacgtgagcctccgcgagatggccgag
ataaccgaggggttcgtcgggtccgacctcgaatccatcggccgggaggccgccatcgag
gccctgcgggaggacgacgacgccgaaatcgtcgacatgcgtcacttccgccaggccatg
gagaacgttcgccccacgatcaccgacgacatccgcgactactacgagcagatggaagag
gagttcaagagcggcggccagagccgacagggcccccgttcgggcggtcgcatcggcttc
cagtaa
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