KEGG   Halosimplex rubrum: HZS55_17725
Entry
HZS55_17725       CDS       T06687                                 
Name
(GenBank) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
hrr  Halosimplex rubrum
Pathway
hrr04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:hrr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    HZS55_17725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hrr03019]
    HZS55_17725
   03009 Ribosome biogenesis [BR:hrr03009]
    HZS55_17725
   04131 Membrane trafficking [BR:hrr04131]
    HZS55_17725
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hrr04147]
    HZS55_17725
Messenger RNA biogenesis [BR:hrr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     HZS55_17725
Ribosome biogenesis [BR:hrr03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    HZS55_17725
Membrane trafficking [BR:hrr04131]
 SNARE
  SNARE associated proteins
   Others
    HZS55_17725
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    HZS55_17725
Exosome [BR:hrr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   HZS55_17725
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N CDC48_2 RuvB_N AAA_16 AAA_2 TIP49 AAA_5 AAA_14 AAA_22 AAA_33 NPHP3_N nSTAND3 RNA_helicase Mg_chelatase AAA_7 IstB_IS21 AAA_28 Parvo_NS1 AAA_3 DUF815 ABC_tran AAA_lid_PRS2_C AAA_18 ATPase Sigma54_activat TsaE AAA_11 AAA_24 NACHT NB-ARC AAA_17 PhoH Zeta_toxin AAA_30 AAA_19 SLFN-g3_helicase Bac_DnaA bpMoxR ATPase_2 Vps4_C ATP-synt_ab
Other DBs
NCBI-ProteinID: QLH79021
UniProt: A0A7D5P4M7
LinkDB
Position
complement(3549462..3551732)
AA seq 756 aa
MRLTVKPLKQKDAGRGLAAIDRAAMSELDLENGDYIVIEGGESTRAVARVWPGYPEDEGR
GVIRIDGRLRQEADVGIDDNVDVEKADVKPATSVSVALPQNLRVRGNVGPMIRNNLSGQA
ITEGQTVPVSFGLGPLSSMSGQKIPLKIAGTEPTGTVVVTDSTEVDVAEKPAEQITGETP
GAPEGGAPDITYEDIGGLDDELEQVREMIELPMRHPELFETLGIEPPKGVLLHGPPGTGK
TLMAKAVANEIDAYFTDISGPEIMSKYYGESEEQLREIFDEAEENSPAIVFIDEIDSIAP
KRGETQGDVERRVVAQLLSLMDGLESRGQVIVIGATNRVDAVDPALRRGGRFDREIEIGV
PDKNGRKEILQVHTRGMPLVDGIDLEQYAESTHGFVGADLESLAKESAMNALRRIRPELD
LESDEIDAEVLEHLEVTEDDFKQALKGIEPSALREVFVEVPDVTWDQVGGLEDTKERLRE
TIQWPLDYPEVFEAMDMQAAKGVLMYGPPGTGKTLLAKAIANEAQSNFISIKGPELLNKF
VGESEKGVREVFEKARSNAPTVVFFDEIDSIAGERGGNTTDSGVGERVVSQLLTELDGLE
ELEDVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEEARRKIFEVHTRDKPLAEGVDL
DDLAARTDGYVGADIEAVTREASMAATREFLASVDPEDIGDSVGNVKVTMEHFEHALGEV
GPSVDADTREQYEEIEERFDTAEAETGTDELGRTFQ
NT seq 2271 nt   +upstreamnt  +downstreamnt
atgagactcactgtcaaacccctcaagcagaaggacgcggggcgcggactcgccgcgatc
gaccgtgcggcgatgtcggagctcgacctggagaacggcgactacatcgtcatcgagggc
ggcgagagtacccgcgcggtcgcgcgggtctggccgggctaccccgaggacgagggccgc
ggcgtcatccgcatcgacgggcggctccgccaggaggccgacgtgggcatcgacgacaac
gtcgacgtcgagaaggccgacgtgaagccggcgaccagcgtcagcgtcgccctcccgcag
aacctccgggttcgcggcaacgtcggcccgatgatccgcaacaacctcagcggccaggcc
atcaccgagggccagaccgtgcccgtcagcttcgggctcggcccgctctcgtcgatgagc
ggccagaagatcccgctgaagatcgccggcaccgaacccaccgggaccgtcgtcgtgacg
gactccacggaggtcgacgtggccgagaagcccgccgagcagatcaccggcgaaaccccc
ggcgcgcccgaaggcggcgcgcccgacatcacctacgaggacatcgggggcctggacgac
gagctcgaacaggtccgcgagatgatcgagttgccgatgcgccaccccgagctgttcgag
acgctcggcatcgagccgccgaagggcgtgctcctgcacggcccgcccggcaccgggaag
acgctcatggcgaaggccgtcgccaacgagatcgacgcgtacttcaccgacatctccggc
ccggagatcatgtcgaagtactacggggagtccgaagagcagctccgcgagatcttcgac
gaggccgaggagaactcccccgccatcgtcttcatcgacgagatcgactccatcgcgccc
aagcggggcgagacccagggcgacgtggagcgccgcgtcgtcgcgcaactgctctcgctg
atggacggcctcgaatcgcgcgggcaggtcatcgtcatcggcgccacgaaccgcgtcgac
gcggtcgacccggcgctgcgcaggggcggtcgcttcgaccgcgagatcgagatcggcgtc
ccggacaagaacggtcgcaaggagatcctgcaggtccacacccgcgggatgcccctcgtc
gacggcatcgacctggagcagtacgccgagagcacgcacggcttcgtcggcgcggatctg
gagtcgctcgccaaggagtcggcgatgaacgcgctgcggcgcatccgccccgaactcgac
ctcgaatcggacgagatcgacgccgaggtgctcgaacacctggaagtcacggaagacgac
ttcaagcaggcgctgaaggggatcgaaccctcggccctgcgcgaggtgttcgtcgaggtg
cccgacgtgacctgggaccaggtcggcgggctcgaagacaccaaagagcgcttgcgtgag
acgatccagtggccgctggactaccccgaggtgttcgaggccatggacatgcaggccgcc
aagggcgtgctgatgtacggtccgcccggcacggggaagaccttgctcgccaaggccatc
gccaacgaggcccagtcgaacttcatctcgatcaagggccccgaactgctgaacaagttc
gtcggcgaatcggagaagggcgtccgcgaggtcttcgagaaggctcgctcgaacgcaccg
accgtcgtcttcttcgacgagatcgactctatcgccggcgaacgcggcggcaacaccacc
gattcgggcgtcggcgaacgggtcgtctcccagctgctgaccgagctggacgggctggag
gagctggaggacgtggtcgtcatcgcgacgacgaaccgtccggacctcatcgacagcgcg
ctgctgcgaccgggtcgcctcgacaggcacgtccacgtgcccgtcccggacgaggaggcc
cgccggaagatcttcgaggtccacacccgcgacaagccgctcgccgagggcgtcgacctg
gacgacctggcggcccgcacggacggctacgtcggcgccgacatcgaggcggtcacccgc
gaggcgtcgatggccgcgacccgcgagttcctcgcgagcgtcgaccccgaggacatcggt
gactccgtcggcaacgtgaaggtcacgatggagcacttcgagcacgcgctcggcgaggtc
ggccccagcgtcgacgcggacactcgcgagcagtacgaggagatcgaagagcgcttcgac
accgccgaggccgagaccggcaccgacgaactcggacgcaccttccagtga

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