Hymenobacter sp. BT18: HER32_00110
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Entry
HER32_00110 CDS
T06970
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03030
DNA replication
hrs03430
Mismatch repair
hrs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HER32_00110
03430 Mismatch repair
HER32_00110
03440 Homologous recombination
HER32_00110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrs03032
]
HER32_00110
03400 DNA repair and recombination proteins [BR:
hrs03400
]
HER32_00110
Enzymes [BR:
hrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HER32_00110
DNA replication proteins [BR:
hrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HER32_00110
DNA repair and recombination proteins [BR:
hrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HER32_00110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DNA_pol_A_exo1
DUF7508
Motif
Other DBs
NCBI-ProteinID:
QIX59680
LinkDB
All DBs
Position
complement(21104..22582)
Genome browser
AA seq
492 aa
AA seq
DB search
MYAIIDLETTGGQPTQDRITEIAIFIHDGEKVVDQYDTLLNPGRPIPFFITQLTGITDDM
VRDAPKFHEVARKVVEMTEGCVFVAHNVRFDYSFLKKEFADLGYNYSRKTLCTVRLSRSL
MPGQPSYSLGKLCQNIGIPLNGRHRAAGDAGATAILFDRLLKISQQDEALRNPTVSPADT
LAAVDALAPGGKKPTKQPSSRKVEAVREAIRTALLPPNITPEKVASLPQEAGVYYFHNEA
GEVIYVGKSINIYKRIQQHFAVDYKSRKSLEFKNSISDITWELTGSELVALLYESHEIKR
LKPLYNRAQRRSVFPAGIFLRTDDNGYKHLYYGRADDHAQSHPLIALGNQYKAKAFLFHK
VSKFNLCQKLCDLYKTPGSCFDYQVHRCKGACLGLEPAEEYNKRVEEAVESFTYEHGSFV
VVGRGRSEDEKTLVVVENGRYLGFGYVDGTFSARRFADFKDAIKRYNDNKDVQQIIRQYL
RTKHKDKVKVFK
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgccatcattgaccttgaaaccacgggtgggcagcccacacaggaccgcatcacc
gaaatagccatcttcatccacgatggcgaaaaggtggtggaccagtacgacacgctgctg
aatcccggccggcctatcccctttttcatcacccagctcacgggtatcaccgatgatatg
gtgcgggacgcccccaaatttcacgaggtggctcgcaaagtggtggaaatgaccgagggc
tgcgtgtttgtggcccacaacgtgcggtttgactattccttcctgaaaaaagagtttgcg
gacctgggctacaactactcgcgcaaaacgctatgcaccgtgcgcctgagccgctccctg
atgcccggacagcctagctacagcctcggcaagctatgccagaacatcggcattccgctg
aacggccgccaccgggccgccggcgacgcgggggccactgccattctcttcgaccggctt
ctcaagataagccagcaagacgaagccctgcgcaaccccaccgtaagcccggccgatacg
ctggccgccgtggacgcgctggcgccggggggtaagaagcccactaaacagccctcctcg
cgcaaggtagaagccgtgcgtgaggccattcgcacggccttgctgccgcccaacatcacc
cccgaaaaagtagcctcgcttccccaggaagccggagtgtactacttccacaacgaggcc
ggggaggttatttacgtgggcaagagcatcaacatctacaagcgcatccagcagcacttc
gccgttgactacaagtcgcgcaaaagtctggagtttaagaactccatttcggatatcacc
tgggagctgacgggctcggagctggtggcgctgctgtatgagtctcacgaaatcaagcgc
ctgaagccgctctacaaccgcgcccagcgccgctcggtgtttccggccggtatctttctg
cgcaccgacgacaacggctacaaacacctctactacgggcgcgctgacgaccatgcccag
tcgcacccgctcattgccctaggcaaccagtacaaggccaaggcctttctgttccacaaa
gtctcgaagttcaacctctgccagaagctctgcgacttgtacaagacccctggctcctgc
tttgattatcaggtgcaccgctgcaaaggcgcctgcctgggcctggagcccgccgaggag
tacaacaagcgcgtggaggaagccgtggaaagctttacctatgagcacggctcttttgtg
gtagtaggccgtggccgcagcgaagacgagaaaaccctggtagtcgtagaaaacggccgt
tacctgggcttcggctacgtggatggtacgttttccgcccggcgcttcgctgatttcaag
gacgccattaagcgctacaacgacaataaggatgtgcagcagatcatccgccagtacctg
cgcaccaagcacaaagacaaggtgaaggtgtttaagtaa
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