Hymenobacter sp. BT18: HER32_01955
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Entry
HER32_01955 CDS
T06970
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER32_01955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrs03019
]
HER32_01955
03009 Ribosome biogenesis [BR:
hrs03009
]
HER32_01955
Enzymes [BR:
hrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HER32_01955
Messenger RNA biogenesis [BR:
hrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HER32_01955
Ribosome biogenesis [BR:
hrs03009
]
Prokaryotic type
rRNA helicases
HER32_01955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QIX60018
LinkDB
All DBs
Position
complement(455692..457656)
Genome browser
AA seq
654 aa
AA seq
DB search
MEQEKVKMKFSELTLSEEMQRAIAEVGYEEASPIQEAAIPVMLQGRDVIGQAQTGTGKTA
AFSIPAIELIDTDSREVQAIVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGSSYDRQ
FRALERGVQIVIGTPGRVMDHIERGTLKLDACKMIILDEADEMLDMGFRDDIETVLKKMP
EQRQTVFFSATMSKPIMEMTKRYQKDPQIVKVNHQEMTVTNIEQSYFEVRGPQKKDVLTR
LIDMYNIKSGIVFANTKRMVDEIVGDLQAKGYFAEGLHGDMGQQQRQNTLDKFRKGTLEI
LVATDVAARGIDVENVEVVVNYDLPADEEYYVHRIGRTGRAGKTGKAFTFVSGRDIYKLR
DIMRFTKATIKQERVPSFEDVSEVKTTLMLNSIKEVIEKGNLDKYIARVQRLIDQDQEDG
VTSLDVAAALLKMTMKEDKRAQESLDASRTQGAARPGFTRLFVTMGKKDRLHPRDIVDLI
AENTSLTAGKVGDIALYDKFSFVEVPNEFVEEVISQLGRSTIQGRPVAFNIATPRQEGDA
QQEGGNRGGFGGGERPRRGPGGFGGGERREGGFGGNRGGGSYGGNRGGGSYGERREGGSS
YGGNRGGGSYGGNRGGNSYGGDRREGGSSYGGNRGGGSYGGGYKGKREDNNFDE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagaaaaggtaaaaatgaaattcagcgagctgaccctctctgaagaaatgcag
cgtgccattgccgaagttgggtacgaagaagcttcccccattcaggaggccgctattccc
gtgatgctgcagggccgcgacgtaatcgggcaggcccagacgggcaccggcaaaaccgcc
gccttctccatccccgccatcgaacttatcgacaccgactcccgcgaggtgcaggccatt
gtgctttgccccacccgcgagctggctgtgcaggtttccggcgaaatccagaagctgggc
aagtacaagcgtggtctggccgtggtgccgatttacggcggtagctcctacgaccggcag
ttccgcgccctggagcgcggcgtgcagatcgtaattggcacgcccggccgcgtgatggac
cacatcgagcggggcaccctcaagctggatgcctgtaagatgatcatcctcgacgaagct
gacgaaatgctcgacatgggtttccgcgacgacatcgagacggtgctcaagaaaatgccc
gagcagcgccagacggtgttcttctcggctaccatgagcaagccgatcatggagatgacc
aagcgctaccagaaggatccgcagatcgtgaaggtcaaccatcaggaaatgacggtgact
aacatcgagcagagctacttcgaggtgcgtggccctcagaagaaggacgtgctgacgcgt
ctgatcgacatgtacaacatcaagtcgggcatcgtcttcgccaacaccaagcgcatggtg
gatgagattgtgggcgacctgcaagccaaaggctacttcgccgaaggcctgcacggcgac
atgggccagcagcagcgccagaataccctcgacaaattccgtaaaggcacgctggaaatc
ctcgtagccactgacgtagccgcccgcggcatcgacgtggagaacgtggaggtggtcgtg
aactacgacctgcccgccgacgaggagtactacgtgcaccgcattggccgcaccggccgc
gccggcaaaaccggtaaagccttcaccttcgtgagcggccgcgacatctataagctgcgc
gacatcatgcgcttcaccaaagccaccatcaagcaggagcgcgtgcccagcttcgaagat
gtgtcggaggtgaaaaccacgctgatgctgaactccatcaaggaggtaattgaaaagggt
aacctggacaaatacattgcccgcgtgcagcgcctcatcgatcaggatcaggaagacggc
gttacgtccttggacgtagccgctgccttgctaaaaatgacgatgaaggaagacaagcgt
gcccaggaaagcctcgacgccagccgcacccaaggtgctgcccgccccggcttcacgcgc
ctcttcgtcacgatgggtaagaaagaccgtctgcacccccgcgacatcgtggacctgatt
gccgaaaataccagcctcacggccggtaaagttggggacattgccctctacgacaagttc
agcttcgtggaagtgccgaatgagtttgtagaagaagttatcagccagctgggccgtagc
accattcagggtcggcccgtagccttcaacattgctacgccccgccaggaaggtgatgcg
cagcaggaaggcggtaaccgcggcggcttcggtggcggtgagcgtcctcgtcggggcccg
ggtgggttcggcggtggcgagcgtcgtgagggcggcttcggtggcaaccgcggtggcggc
tcctacggcggcaaccgcggcggtggctcctacggtgagcgtcgcgaaggcggcagttcc
tacggcggcaaccgcggtggtggctcctacggcggcaaccgtggtggcaactcctatggc
ggcgaccgtcgtgaaggtggtagctcctacggtggcaaccgtggtggcggctcctacggt
ggtggctacaaaggcaagcgcgaagacaacaacttcgacgagtag
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