Hymenobacter sp. BT18: HER32_03570
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Entry
HER32_03570 CDS
T06970
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hrs
Hymenobacter sp. BT18
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hrs03009
]
HER32_03570 (rlmD)
Enzymes [BR:
hrs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HER32_03570 (rlmD)
Ribosome biogenesis [BR:
hrs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HER32_03570 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRAM
MTS
Cons_hypoth95
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QIX63405
LinkDB
All DBs
Position
862872..864221
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AA seq
449 aa
AA seq
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MVAEGKCLVRRENLVIFVTQVAPGDVVDLRVTKAKKNFLEAVPTHFHKYSALRVTPFCEH
FGTCGGCKWQHLGYDTQLKFKHQQVADTLQRIGKVALPEILPIQPSPDQTYYRNKLEYTF
SHNGWLTNEQINSGHNYERRVLGFHTPGRFDKILDINHCWLQPDPSNQIRLAVRDYALEH
ELPFNNLVTQEGFLRNLIIRTANTGDLMVILQCYYAHDALFPLLDFLHERFPQITSLNYV
LNDKGNETFHDLEVVCYRGEPHIHEEMEGLRFRVGPKSFYQTNSDGAFNLYKITRDFAQL
TGSELVYDLYTGAGTIANFVARQARHVVGVEYVESAVKDAYINSEINGTTNTEFYAGDMK
DVLNAEFIQKHGRPDVVITDPPRAGMHPDVVARLLEMRAPRIVYVSCNPGTQARDLELLD
EAYKVVKVQPVDMFPHTHHVENVVLLELR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgagggcaagtgcctggtgcgccgcgagaacctggtcatctttgtgacgcaa
gtagcccccggcgacgtggtggacctgcgcgtgaccaaggccaaaaagaacttcctggaa
gctgtgcccacgcactttcataagtattccgctttacgcgtaacgcccttctgcgagcat
ttcggcacctgcgggggctgcaagtggcagcacctgggctacgatacccagctcaagttc
aagcaccagcaggtggccgacaccctgcagcgcatcggcaaagtagccctgcccgaaatc
ctgccgattcagccttcgcccgaccagacgtattaccgcaacaagctggagtacaccttc
agccacaacggctggctcaccaacgagcagatcaacagcggccacaattacgagcggcgc
gtcctgggcttccacacccccggccgcttcgataagattctcgacatcaaccactgctgg
ctgcagcccgaccccagcaaccagatccggctggccgtgcgcgactacgccctggagcac
gagctgcccttcaacaacctcgtgacccaggaaggcttcctgcgcaacctcatcatccgc
acggccaacaccggcgacctgatggtgattctgcagtgctactacgcccacgacgcgctg
tttccgctgctggatttcctgcacgagcggttcccgcaaatcacctccctcaactacgtg
ctcaacgacaagggcaacgaaaccttccacgacctggaggtggtgtgctaccggggcgag
ccgcacattcacgaggaaatggaaggcctgcgcttccgcgtcggcccaaaatccttctac
cagaccaactccgacggggccttcaacctctacaaaatcacccgcgacttcgcccagctc
accggctcggagctagtctatgacctctacaccggggccggcaccatcgctaacttcgtg
gcccggcaggcccggcacgtggtgggcgtggagtatgtggaatcggccgtgaaggacgcc
tacatcaactccgaaatcaacggcaccaccaacaccgagttctacgccggcgacatgaag
gacgtgctcaacgccgagttcatccaaaagcacggccgccccgacgtggtcatcaccgac
ccgccccgcgccggcatgcaccccgacgtagtggcccgcctgctcgaaatgcgcgccccc
cgcatcgtctacgtcagctgcaaccccggcacccaggcccgcgacctggagctgctggac
gaagcctacaaagtggtaaaagtgcagcccgtggacatgttcccccacacccaccacgtg
gagaatgtggtgctgctggagctgcggtag
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