Hymenobacter sp. BT18: HER32_06920
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Entry
HER32_06920 CDS
T06970
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER32_06920 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrs03019
]
HER32_06920 (recQ)
03400 DNA repair and recombination proteins [BR:
hrs03400
]
HER32_06920 (recQ)
Enzymes [BR:
hrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HER32_06920 (recQ)
Messenger RNA biogenesis [BR:
hrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HER32_06920 (recQ)
DNA repair and recombination proteins [BR:
hrs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HER32_06920 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
GlutR_N
Motif
Other DBs
NCBI-ProteinID:
QIX60926
LinkDB
All DBs
Position
complement(1650761..1652962)
Genome browser
AA seq
733 aa
AA seq
DB search
MPAVKQAAAQPAADLKGKLKEVFGYGQFRGTQEAIIQNVIEGHNTFVIMPTGAGKSLCYQ
LPALVLPGTAIVISPLIALMKNQVDQLNAFGVNAAFLNSTLSKTEMNKVKRDVISGDVRL
LYVAPESLTKDETIEFLQKATISFVAIDEAHCISEWGHDFRPEYRKIRSIIDGLGVDVPI
IALTATATPKVQLDIQKNLQMDEASVFKTSFNRTNLYYEVRPKHQTKKQLIQYVKQRKGQ
AGIVYCLSRKKVEEIAELLRVNDVRALPYHAGLDPQVRMANQDAFLNEDCDVVVATIAFG
MGIDKPDVRFVIHYDTPKSIEGYYQETGRGGRDGLEGDCLMFYSYDDIVKLEKFNKDKPV
TERDNSKLLLQEMANYADSAVCRRKQLLHYFGETFEKDCGFCDNCRHPREKFEGKEFVKL
ALQAVVQTEQRFGIEHLTSVLTGLTNPHIESYGHNKLPIYGAGNDHDVAFWHSVLRQCMI
AGLLGKDIENFGVVRICPKGEEFLVAPYSFKLSKDHNYEEEMQEQAEQEEVQQAAGHDAA
LFDMLKALRKKLAHQKGLPPYVLFQDPSLKEMATTFPVKMEDLAHVSGVGQGKAQKFGGP
FLDLIKKYVEENDIMTAADVVVKSAVNKSKIKIYIIQQIDKKMDLEEIASSKGIDMRELM
EEIEHICYAGTKLNLDYYIDSVLDEERQGEIYDYFMSASTDNIAVALKELGDDEYTEEDL
RLMRIKFLSEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgttaaacaagccgccgctcagccggctgctgatctgaagggcaagttaaag
gaagttttcgggtacggccagtttcgcggtacccaggaagccattatccagaacgtcatt
gagggccacaacaccttcgtgattatgcctaccggtgccggcaagagcctttgctatcag
ctgcctgcgctggtgctgcctggcacggccattgtgatttcgccgctgattgccctgatg
aaaaaccaggtagaccagctcaacgcctttggcgtgaacgcggcgttcctgaactcgacc
ttgtcgaagacggagatgaacaaggtgaagcgggacgttatcagcggagatgtgcggctg
ctgtacgtagcgcccgagagtctgaccaaagacgaaaccattgagtttctacagaaggct
actatctcttttgtcgccatcgatgaggcgcactgcatctcggagtgggggcacgacttc
cggcctgagtaccgcaaaatccgcagcatcatcgacgggctcggcgtagatgtgcctatc
atagcccttacggccacggccacgcctaaagtgcagctggacatccagaaaaacctgcag
atggacgaggcctccgtgtttaagacctccttcaaccgaaccaacctctactacgaagta
cggcctaagcaccagaccaaaaagcagctgattcagtacgtgaagcagcgcaaagggcag
gccggcattgtatactgtctttcccgcaagaaagtagaggaaatagccgagctgctgcgc
gtgaacgacgtgcgcgctctgccctaccacgccggcctcgacccgcaggtgcgcatggct
aaccaggatgctttcctgaatgaggactgcgatgtagtggtggctactatcgcctttggc
atgggcatcgataagcctgacgtgcgcttcgtgattcactacgacacgcccaaaagcatt
gagggctactaccaggaaaccggtcgtggcggccgcgacggtctggaaggggactgcctg
atgttctacagctacgacgacatcgtgaagctggagaagttcaacaaggacaagcccgtg
acggagcgcgacaacagcaagctgctgctgcaggaaatggctaactatgccgattccgcg
gtttgccgccgcaagcagctgctgcactacttcggcgaaacgtttgagaaggactgcggc
ttttgcgacaactgccggcacccacgcgagaagttcgagggcaaggaatttgtgaagctg
gccctgcaggccgtggtgcaaaccgagcagcgctttggcatcgagcacctgaccagcgta
ctcacgggcctgaccaacccccacatcgaaagctacggccacaacaagctaccgatttac
ggggccggaaacgaccacgatgtggccttttggcactcggtgctgcgccagtgcatgatt
gcgggcttgctcggcaaggacattgagaacttcggtgtggtgcgcatctgccccaaaggc
gaagaatttctggtggctccttacagcttcaagctctcgaaggatcataactacgaggag
gaaatgcaggagcaggccgagcaggaagaagttcagcaggccgccggccatgatgccgcc
ctcttcgacatgctgaaggctttgcgcaaaaagctagcacatcagaaaggcctgccgccc
tatgtgctgttccaggacccttcactcaaggaaatggctaccaccttccccgtgaagatg
gaagacctagcccacgtatcgggtgtaggacagggcaaggcccagaaattcggtggcccg
ttcctggacctgatcaaaaagtacgtcgaagaaaacgacattatgacggccgccgacgtg
gtggtaaaatcagctgtcaacaagtcgaaaatcaagatttacatcatccagcagatcgac
aagaagatggacctggaggaaattgcttcctccaagggcatcgacatgcgggagctgatg
gaggaaattgagcatatctgctacgccggcaccaagctcaacctcgactattatatcgac
tccgtactggatgaggagcggcagggagaaatctacgattacttcatgtcggccagcacc
gataacattgccgtggctctgaaggagctcggtgatgatgaatacacggaagaagacctg
cgcctgatgcgcatcaagttcctgagcgaggtagccaactag
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